RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 CKAP4Q07065 602 aaKnown RBP8.73□□□□□ -1.01
USP4-213ENST00000488520 BCL2L1Q07817 233 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 ADCY2Q08462 1091 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 SLC10A7Q0GE19 358 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 EIF2B5Q13144 721 aaKnown RBP8.73□□□□□ -1.01
USP4-213ENST00000488520 SPIDRQ14159 915 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 TGIF1Q15583 401 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 LINC00303Q3SY05 128 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 RALGPS1Q5JS13 557 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 ITPRIPL1Q6GPH6 555 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 C22orf39Q6P5X5 142 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 C4orf22Q6V702 233 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 KYAT3Q6YP21 454 aaKnown RBP8.73□□□□□ -1.01
USP4-213ENST00000488520 DPY19L3Q6ZPD9 716 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 ARHGEF18Q6ZSZ5 1173 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 USP53Q70EK8 1073 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 PARGQ86W56 976 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 TP53INP2Q8IXH6 220 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 SLC35F3Q8IY50 421 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.73□□□□□ -1.01
USP4-213ENST00000488520 MNS1Q8NEH6 495 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 OR2AP1Q8NGE2 309 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 COG1Q8WTW3 980 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 EXTL1Q92935 676 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 FEM1CQ96JP0 617 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 RUNDC3BQ96NL0 473 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 AGAP3Q96P47 875 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 PSKH2Q96QS6 385 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 FAM118BQ9BPY3 351 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 CCDC3Q9BQI4 270 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 AP1M1Q9BXS5 423 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 OSBPL1AQ9BXW6 950 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 HDAC8Q9BY41 377 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 TM6SF2Q9BZW4 377 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 ZDHHC6Q9H6R6 413 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 ATP13A3Q9H7F0 1226 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 EPB41L5Q9HCM4 733 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 GULP1Q9UBP9 304 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 GGT7Q9UJ14 662 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 PCDHGA8Q9Y5G5 932 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 FADS3Q9Y5Q0 445 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 ACTL7AQ9Y615 435 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 CSNK1G3Q9Y6M4 447 aa8.73□□□□□ -1.01
USP4-213ENST00000488520 CACNA1DQ01668 2161 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 CCDC187A0A096LP49 1063 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 A0A1W2PQ67 120 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 FAM229AH3BQW9 127 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 CCDC188H7C350 402 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 ZNF185O15231 689 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 INSIG1O15503 277 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 LIASO43766 372 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 MMP20O60882 483 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 IFNB1P01574 187 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 ANXA6P08133 673 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 ADRB3P13945 408 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 HGFP14210 728 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 SERPINA4P29622 427 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 SLC5A2P31639 672 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 GKP32189 559 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 RABIFP47224 123 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 CCNHP51946 323 aaPredicted RBP8.72□□□□□ -1.01
USP4-213ENST00000488520 PDX1P52945 283 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 EPHB1P54762 984 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 AP1S1P61966 158 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 IFI35P80217 286 aaPredicted RBP8.72□□□□□ -1.01
USP4-213ENST00000488520 PLAURQ03405 335 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 SGCGQ13326 291 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 KLF1Q13351 362 aaPredicted RBP8.72□□□□□ -1.01
USP4-213ENST00000488520 COLEC12Q5KU26 742 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 KIAA1161Q6NSJ0 714 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 CCDC137Q6PK04 289 aaKnown RBP8.72□□□□□ -1.01
USP4-213ENST00000488520 GDPD4Q6W3E5 623 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 B4GALNT4Q76KP1 1039 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 PARS2Q7L3T8 475 aaKnown RBP8.72□□□□□ -1.01
USP4-213ENST00000488520 B3GNT8Q7Z7M8 397 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 CLEC14AQ86T13 490 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 TTC7BQ86TV6 843 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 FBXO39Q8N4B4 442 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 TEX26Q8N6G2 289 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 FAM71DQ8N9W8 422 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 PDCD6IPQ8WUM4 868 aaKnown RBP8.72□□□□□ -1.01
USP4-213ENST00000488520 OLFM3Q96PB7 478 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 QKIQ96PU8 341 aaKnown RBP eCLIP8.72□□□□□ -1.01
USP4-213ENST00000488520 NUDCD1Q96RS6 583 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 TUBGCP5Q96RT8 1024 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 BOCQ9BWV1 1114 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 CPEB1Q9BZB8 566 aaKnown RBP8.72□□□□□ -1.01
USP4-213ENST00000488520 FOXP3Q9BZS1 431 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 PDFQ9HBH1 243 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 GPR27Q9NS67 375 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 NCKIPSDQ9NZQ3 722 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 SIRPGQ9P1W8 387 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 SPASTQ9UBP0 616 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 APOBEC3BQ9UH17 382 aaKnown RBP8.72□□□□□ -1.01
USP4-213ENST00000488520 DNPEPQ9ULA0 475 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 PNMA8BQ9ULN7 279 aaPredicted RBP8.72□□□□□ -1.01
USP4-213ENST00000488520 PADI4Q9UM07 663 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 ITM2BQ9Y287 266 aa8.72□□□□□ -1.01
USP4-213ENST00000488520 AAR2Q9Y312 384 aaKnown RBP8.72□□□□□ -1.01
USP4-213ENST00000488520 TCRBV7S2A1N4TA0A589 114 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms