RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 SPAM1P38567 509 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 PTGER3P43115 390 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 ITGA9Q13797 1035 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 LRRC66Q68CR7 880 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 KLC3Q6P597 504 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 FAM151BQ6UXP7 276 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 TRPM8Q7Z2W7 1104 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 SNX20Q7Z614 316 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 FLCNQ8NFG4 579 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 PJA1Q8NG27 643 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 OR2T3Q8NH03 318 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 RFWD2Q8NHY2 731 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 HCAR2Q8TDS4 363 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 ANKRD49Q8WVL7 239 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 THOC1Q96FV9 657 aaKnown RBP14.08□□□□□ -0.16
CUX1-209ENST00000487284 SLC6A17Q9H1V8 727 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 CCDC68Q9H2F9 335 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 ZNF395Q9H8N7 513 aaPredicted RBP14.08□□□□□ -0.16
CUX1-209ENST00000487284 DKK3Q9UBP4 350 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 FNDC3AQ9Y2H6 1198 aaKnown RBP14.08□□□□□ -0.16
CUX1-209ENST00000487284 TECTAO75443 2155 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 GLYATL1P3A0A0U1RQE8 302 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 AGAP14A8MT82 685 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 TMEM114B3SHH9 223 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 CHURC1-FNTBB4DL54 471 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 PLK4O00444 970 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 ITM2AO43736 263 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 ESR1P03372 595 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 RBP1P09455 135 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 ITGALP20701 1170 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 ITGB7P26010 798 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 FMO4P31512 558 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 SLC1A6P48664 564 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 RPS14P62263 151 aaKnown RBP14.07□□□□□ -0.16
CUX1-209ENST00000487284 SEMG2Q02383 582 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 SIGLEC14Q08ET2 396 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 NFATC2Q13469 925 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 ACAP2Q15057 778 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 CST6Q15828 149 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 CRY1Q16526 586 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 GPR33Q49SQ1 333 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 SETMARQ53H47 684 aaPredicted RBP14.07□□□□□ -0.16
CUX1-209ENST00000487284 LIPMQ5VYY2 423 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 TRIM67Q6ZTA4 783 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 CRLF3Q8IUI8 442 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 SPATA6LQ8N4H0 392 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 P2RY12Q9H244 342 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 KDM4CQ9H3R0 1056 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 ABCF3Q9NUQ8 709 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 C2orf42Q9NWW7 574 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 TAS2R13Q9NYV9 303 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 B4GALT6Q9UBX8 382 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 OAS3Q9Y6K5 1087 aaKnown RBP14.07□□□□□ -0.16
CUX1-209ENST00000487284 ANKRD12Q6UB98 2062 aa14.07□□□□□ -0.16
CUX1-209ENST00000487284 UPK3BL1B0FP48 263 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 UPK3BL2E5RIL1 263 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 MID1O15344 667 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 GPR39O43194 453 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 OR1I1O60431 355 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 DLX3O60479 287 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 RNASEH1O60930 286 aaKnown RBP14.06□□□□□ -0.16
CUX1-209ENST00000487284 LYPLA1O75608 230 aaPredicted RBP14.06□□□□□ -0.16
CUX1-209ENST00000487284 RHOBTB1O94844 696 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 PDGFBP01127 241 aaPredicted RBP14.06□□□□□ -0.16
CUX1-209ENST00000487284 C1SP09871 688 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 CYP2A6P11509 494 aaPredicted RBP14.06□□□□□ -0.16
CUX1-209ENST00000487284 TIMP2P16035 220 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 ZNF30P17039 623 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 RPS3P23396 243 aaKnown RBP eCLIP14.06□□□□□ -0.16
CUX1-209ENST00000487284 ARRB2P32121 409 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 VIPR1P32241 457 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 PPARGP37231 505 aaPredicted RBP14.06□□□□□ -0.16
CUX1-209ENST00000487284 ABCE1P61221 599 aaKnown RBP14.06□□□□□ -0.16
CUX1-209ENST00000487284 PDAP1Q13442 181 aaKnown RBP14.06□□□□□ -0.16
CUX1-209ENST00000487284 CTSL3PQ5NE16 218 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 FAM46CQ5VWP2 391 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 LYPLAL1Q5VWZ2 237 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 ZDHHC20Q5W0Z9 365 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 ZNF776Q68DI1 518 aaPredicted RBP14.06□□□□□ -0.16
CUX1-209ENST00000487284 NAPRTQ6XQN6 538 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 CCDC121Q6ZUS5 278 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 TAS2R42Q7RTR8 314 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 SERPINA9Q86WD7 417 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 TMPRSS6Q8IU80 811 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 GPR26Q8NDV2 337 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 EDAQ92838 391 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 PBXIP1Q96AQ6 731 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 PPP1R16AQ96I34 528 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 PLEKHG4BQ96PX9 1271 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 SORT1Q99523 831 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 GATA5Q9BWX5 397 aaPredicted RBP14.06□□□□□ -0.16
CUX1-209ENST00000487284 OSBPL6Q9BZF3 934 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 ASB8Q9H765 288 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 FBRSQ9HAH7 460 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 KCNK13Q9HB14 408 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 SYTL2Q9HCH5 934 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 PCDHB1Q9Y5F3 818 aa14.06□□□□□ -0.16
CUX1-209ENST00000487284 TCRBV21S2A2A0A5A6 115 aa14.05□□□□□ -0.16
CUX1-209ENST00000487284 A8MX80 341 aa14.05□□□□□ -0.16
CUX1-209ENST00000487284 PRMT5O14744 637 aaPredicted RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms