RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 SIK3Q9Y2K2 1263 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 ZNF451Q9Y4E5 1061 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 ZNF106Q9H2Y7 1883 aaKnown RBP16.93■□□□□ 0.3
VIM-204ENST00000478746 WIPF3A6NGB9 483 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 ARGFXA6NJG6 315 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 FADS2P1A8MWK0 482 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 ARL4AP40617 200 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 SLC19A1P41440 591 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 UBE2HP62256 183 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 RPS18P62269 152 aaKnown RBP16.92■□□□□ 0.3
VIM-204ENST00000478746 RPS15P62841 145 aaKnown RBP16.92■□□□□ 0.3
VIM-204ENST00000478746 PRR30Q53SZ7 412 aaPredicted RBP16.92■□□□□ 0.3
VIM-204ENST00000478746 JMJD6Q6NYC1 403 aaPredicted RBP16.92■□□□□ 0.3
VIM-204ENST00000478746 FAM199XQ6PEV8 388 aaPredicted RBP16.92■□□□□ 0.3
VIM-204ENST00000478746 FAM92BQ6ZTR7 304 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 PRSS42Q7Z5A4 293 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 NEK11Q8NG66 645 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 ZDHHC12Q96GR4 267 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 RUFY1Q96T51 708 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 FAM83DQ9H4H8 585 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 AKIRIN1Q9H9L7 192 aaPredicted RBP16.92■□□□□ 0.3
VIM-204ENST00000478746 ZNF624Q9P2J8 865 aaPredicted RBP16.92■□□□□ 0.3
VIM-204ENST00000478746 ATXN10Q9UBB4 475 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 CHKBQ9Y259 395 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 PCDHGB7Q9Y5F8 929 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 DOPEY1Q5JWR5 2465 aa16.92■□□□□ 0.3
VIM-204ENST00000478746 ABCA12Q86UK0 2595 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 TMEM191CA6NGB0 347 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 DPM1O60762 260 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 TIAF1O95411 115 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 ZNF8P17098 575 aaPredicted RBP16.91■□□□□ 0.3
VIM-204ENST00000478746 NELFEP18615 380 aaKnown RBP16.91■□□□□ 0.3
VIM-204ENST00000478746 SPINT3P49223 89 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 KRT31Q15323 416 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 CHRNA6Q15825 494 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 HENMT1Q5T8I9 393 aaKnown RBP16.91■□□□□ 0.3
VIM-204ENST00000478746 PLEKHA7Q6IQ23 1121 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 PWWP2BQ6NUJ5 590 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 SYVN1Q86TM6 617 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 TICAM1Q8IUC6 712 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.91■□□□□ 0.3
VIM-204ENST00000478746 TEX26Q8N6G2 289 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 FCRL4Q96PJ5 515 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 MFRPQ9BY79 579 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 TAS2R14Q9NYV8 317 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 LUZP4Q9P127 313 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 RARRES3Q9UL19 164 aa16.91■□□□□ 0.3
VIM-204ENST00000478746 FARSAQ9Y285 508 aaKnown RBP16.91■□□□□ 0.3
VIM-204ENST00000478746 TMCO5BA8MYB1 307 aa16.9■□□□□ 0.3
VIM-204ENST00000478746 ATMINO43313 823 aaPredicted RBP16.9■□□□□ 0.3
VIM-204ENST00000478746 LDLRP01130 860 aa16.9■□□□□ 0.3
VIM-204ENST00000478746 TNFRSF8P28908 595 aa16.9■□□□□ 0.3
VIM-204ENST00000478746 PDE1BQ01064 536 aa16.9■□□□□ 0.3
VIM-204ENST00000478746 IRGCQ6NXR0 463 aa16.9■□□□□ 0.3
VIM-204ENST00000478746 POLNQ7Z5Q5 900 aa16.9■□□□□ 0.3
VIM-204ENST00000478746 SRRM1Q8IYB3 904 aaKnown RBP16.9■□□□□ 0.3
VIM-204ENST00000478746 SIDT2Q8NBJ9 832 aaKnown RBP16.9■□□□□ 0.3
VIM-204ENST00000478746 RSC1A1Q92681 617 aa16.9■□□□□ 0.3
VIM-204ENST00000478746 TCTN2Q96GX1 697 aa16.9■□□□□ 0.3
VIM-204ENST00000478746 TRIM7Q9C029 511 aa16.9■□□□□ 0.3
VIM-204ENST00000478746 POLR1EQ9GZS1 481 aaKnown RBP16.9■□□□□ 0.3
VIM-204ENST00000478746 OR2AG1Q9H205 316 aa16.9■□□□□ 0.3
VIM-204ENST00000478746 ARFGAP3Q9NP61 516 aa16.9■□□□□ 0.3
VIM-204ENST00000478746 PKD2L2Q9NZM6 624 aa16.9■□□□□ 0.3
VIM-204ENST00000478746 EPHA6Q9UF33 1036 aa16.9■□□□□ 0.3
VIM-204ENST00000478746 ERRFI1Q9UJM3 462 aaPredicted RBP16.9■□□□□ 0.3
VIM-204ENST00000478746 ANKRD17O75179 2603 aaKnown RBP16.89■□□□□ 0.29
VIM-204ENST00000478746 C1orf232A0A0U1RR37 186 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 PDZK1P1A8MUH7 402 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 PRLP01236 227 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 CCDC172P0C7W6 258 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 ATP1A3P13637 1013 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 CES1P23141 567 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 CAPZBP47756 277 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 TUBB3Q13509 450 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 DPYSL2Q16555 572 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 TDRD12Q587J7 1177 aaKnown RBP16.89■□□□□ 0.29
VIM-204ENST00000478746 CT47A1Q5JQC4 288 aaPredicted RBP16.89■□□□□ 0.29
VIM-204ENST00000478746 ZNF648Q5T619 568 aaPredicted RBP16.89■□□□□ 0.29
VIM-204ENST00000478746 PPP1R2P3Q6NXS1 205 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 BPHLQ86WA6 291 aaPredicted RBP16.89■□□□□ 0.29
VIM-204ENST00000478746 Q8NA96 180 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 CCHCR1Q8TD31 782 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 TRIM39Q9HCM9 518 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 SLC40A1Q9NP59 571 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 SLC23A2Q9UGH3 650 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 G3BP2Q9UN86 482 aaKnown RBP16.89■□□□□ 0.29
VIM-204ENST00000478746 SRPK3Q9UPE1 567 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 ADGRG1Q9Y653 693 aa16.89■□□□□ 0.29
VIM-204ENST00000478746 RGSL1A5PLK6 1076 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 MTA2O94776 668 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 SLC25A14O95258 325 aaPredicted RBP16.88■□□□□ 0.29
VIM-204ENST00000478746 FOLR1P15328 257 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 LPOP22079 712 aaPredicted RBP16.88■□□□□ 0.29
VIM-204ENST00000478746 SERPINB6P35237 376 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 DSC2Q02487 901 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 IL10RAQ13651 578 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 IHHQ14623 411 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 SEPT7Q16181 437 aaKnown RBP16.88■□□□□ 0.29
VIM-204ENST00000478746 INSCQ1MX18 579 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms