RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 SCN8AQ9UQD0 1980 aa15.4■□□□□ 0.06
HMGA1-206ENST00000478214 TRBV23OR9-2A0A075B6M9 112 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 GPR89AB7ZAQ6 455 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 CCL22O00626 93 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 NUDT21O43809 227 aaKnown RBP15.39■□□□□ 0.05
HMGA1-206ENST00000478214 CSO75390 466 aaKnown RBP15.39■□□□□ 0.05
HMGA1-206ENST00000478214 PRAMEF1O95521 474 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 CAPNS1P04632 268 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 GPR89BP0CG08 455 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 GRIA1P42261 906 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 LMAN1P49257 510 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 CCL7P80098 99 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 XIAPP98170 497 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 PDE1BQ01064 536 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 TMEM115Q12893 351 aaPredicted RBP15.39■□□□□ 0.05
HMGA1-206ENST00000478214 SEMA5AQ13591 1074 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 PEX6Q13608 980 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 ITGA9Q13797 1035 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 SEPT6Q14141 434 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 ST3GAL2Q16842 350 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 PLA2G4EQ3MJ16 856 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 MICALCLQ6ZW33 695 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 LINC00523Q86TU6 105 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 LRRTM4Q86VH4 590 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 ZNF547Q8IVP9 402 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 KDF1Q8NAX2 398 aaPredicted RBP15.39■□□□□ 0.05
HMGA1-206ENST00000478214 DDHD1Q8NEL9 900 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 OR52K1Q8NGK4 314 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 MDM1Q8TC05 714 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 ZNF398Q8TD17 642 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 ZCCHC14Q8WYQ9 949 aaKnown RBP15.39■□□□□ 0.05
HMGA1-206ENST00000478214 DNAJC1Q96KC8 554 aaKnown RBP15.39■□□□□ 0.05
HMGA1-206ENST00000478214 SMARCAL1Q9NZC9 954 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 TBC1D29Q9UFV1 150 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 APPL1Q9UKG1 709 aa15.39■□□□□ 0.05
HMGA1-206ENST00000478214 ARHGEF17Q96PE2 2063 aaPredicted RBP15.39■□□□□ 0.05
HMGA1-206ENST00000478214 A0A1W2PQM1 296 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 TMEM8BA6NDV4 472 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 ERI2A8K979 691 aaKnown RBP15.38■□□□□ 0.05
HMGA1-206ENST00000478214 E7EVH7 732 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 NTN3O00634 580 aaPredicted RBP15.38■□□□□ 0.05
HMGA1-206ENST00000478214 SNX2O60749 519 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 SRP72O76094 671 aaKnown RBP15.38■□□□□ 0.05
HMGA1-206ENST00000478214 SUN1O94901 812 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 RPLP0P05388 317 aaKnown RBP15.38■□□□□ 0.05
HMGA1-206ENST00000478214 PNLIPP16233 465 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 CYP4F3Q08477 520 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 SPIDRQ14159 915 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 GSE1Q14687 1217 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 LDLRAP1Q5SW96 308 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 RBM44Q6ZP01 1051 aaKnown RBP15.38■□□□□ 0.05
HMGA1-206ENST00000478214 GSTA5Q7RTV2 222 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 SPRED1Q7Z699 444 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 CCNJLQ8IV13 435 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 DNAAF3Q8N9W5 541 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 WDR48Q8TAF3 677 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 SLC37A2Q8TED4 501 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 COG1Q8WTW3 980 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 TTC25Q96NG3 672 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 OSBPL9Q96SU4 736 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 CCDC86Q9H6F5 360 aaKnown RBP15.38■□□□□ 0.05
HMGA1-206ENST00000478214 ASB8Q9H765 288 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 HOMER3Q9NSC5 361 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 KLC4Q9NSK0 619 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 SMOXQ9NWM0 555 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 USP24Q9UPU5 2620 aa15.38■□□□□ 0.05
HMGA1-206ENST00000478214 A6NCN8 305 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 RHPN2P1A8MT19 583 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 KMOO15229 486 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 PPM1DO15297 605 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 TCEA3O75764 348 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 APRTP07741 180 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 ZNF7P17097 686 aaPredicted RBP15.37■□□□□ 0.05
HMGA1-206ENST00000478214 HADHAP40939 763 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 CTSCP53634 463 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 B4GALNT1Q00973 533 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 CDH17Q12864 832 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 NFATC2Q13469 925 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 BIRC2Q13490 618 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 GTF2H3Q13889 308 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 INSCQ1MX18 579 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 ISXQ2M1V0 245 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 PPP1R21Q6ZMI0 780 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 C11orf96Q7Z7L8 435 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 TRAPPC5Q8IUR0 188 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 SFRP1Q8N474 314 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 RASGEF1AQ8N9B8 481 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 GFM1Q96RP9 751 aaKnown RBP15.37■□□□□ 0.05
HMGA1-206ENST00000478214 AP1M1Q9BXS5 423 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 LRRN3Q9H3W5 708 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 OSGEPL1Q9H4B0 414 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 FAM96AQ9H5X1 160 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 PRDM8Q9NQV8 689 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 TTC7AQ9ULT0 858 aaPredicted RBP15.37■□□□□ 0.05
HMGA1-206ENST00000478214 DNAJC16Q9Y2G8 782 aa15.37■□□□□ 0.05
HMGA1-206ENST00000478214 BPTFQ12830 3046 aa15.36■□□□□ 0.05
HMGA1-206ENST00000478214 CCDC78A2IDD5 438 aa15.36■□□□□ 0.05
HMGA1-206ENST00000478214 PRR19A6NJB7 356 aa15.36■□□□□ 0.05
HMGA1-206ENST00000478214 PGRMC1O00264 195 aaKnown RBP15.36■□□□□ 0.05
HMGA1-206ENST00000478214 B4GAT1O43505 415 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms