RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 TEX44Q53QW1 395 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ZNF648Q5T619 568 aaPredicted RBP12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ABRAXAS1Q6UWZ7 409 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 NPNTQ6UXI9 565 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 WASH2PQ6VEQ5 465 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 C11orf96Q7Z7L8 435 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CACNA2D3Q8IZS8 1091 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 DTX3LQ8TDB6 740 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 NCSTNQ92542 709 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 GLYATL1Q969I3 302 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 AHCYL2Q96HN2 611 aaKnown RBP12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SLC45A3Q96JT2 553 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ZPBPQ9BS86 351 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TBC1D10AQ9BXI6 508 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 OR2AG1Q9H205 316 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ADNPQ9H2P0 1102 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 GLOD4Q9HC38 313 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 APMAPQ9HDC9 416 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 WASH6PQ9NQA3 447 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SIDT1Q9NXL6 827 aaKnown RBP12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ZNF624Q9P2J8 865 aaPredicted RBP12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 HEY1Q9Y5J3 304 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 NAV2Q8IVL1 2488 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 MAST4O15021 2626 aa12.08□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 LOC285095A0A1B0GVY8 99 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 PYCARD-AS1I3L0S3 204 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 APOL1O14791 398 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 AURKAO14965 403 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CAPN5O15484 640 aaPredicted RBP12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 RAD1O60671 282 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 NDST3O95803 873 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 DLGAP3O95886 979 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 MT-CYBP00156 380 aaPredicted RBP12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 PIRTP0C851 137 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 BRAFP15056 766 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ZFXP17010 805 aaPredicted RBP12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 MAP4P27816 1152 aaKnown RBP12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CD68P34810 354 aaPredicted RBP12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CSRP3P50461 194 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 KCNC4Q03721 635 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 AP1B1Q10567 949 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TRIM14Q14142 442 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 PRKD1Q15139 912 aaPredicted RBP12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CRTC2Q53ET0 693 aaPredicted RBP12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CEACAM20Q6UY09 585 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TMEM26Q6ZUK4 368 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 FAM129CQ86XR2 697 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 RHOT2Q8IXI1 618 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 AVL9Q8NBF6 648 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SPATA22Q8NHS9 363 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TEKT5Q96M29 485 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ZNF830Q96NB3 372 aaPredicted RBP12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 AGAP3Q96P47 875 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 VPS35Q96QK1 796 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ARHGAP9Q9BRR9 750 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SPATA16Q9BXB7 569 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CEP41Q9BYV8 373 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SLC25A18Q9H1K4 315 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CLMPQ9H6B4 373 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ARFGAP3Q9NP61 516 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 RAD18Q9NS91 495 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 KLC4Q9NSK0 619 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ABHD10Q9NUJ1 306 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 WDR70Q9NW82 654 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 IL17BQ9UHF5 180 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SHOC2Q9UQ13 582 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ZNF711Q9Y462 761 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SPO11Q9Y5K1 396 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SLC30A1Q9Y6M5 507 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SEC16AO15027 2179 aa12.08□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SPENQ96T58 3664 aaKnown RBP12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 LOC101059948A0A1B0GTJ6 334 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 A8MU76 341 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 VEGFDO43915 354 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SNX2O60749 519 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 EPOP01588 193 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ZNF7P17097 686 aaPredicted RBP12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 PTPN3P26045 913 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 HMGCLP35914 325 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CDKN2BP42772 138 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SLC1A1P43005 524 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 NOP2P46087 812 aaKnown RBP12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 NR2C2P49116 596 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ABHD18Q0P651 414 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 WASHC5Q12768 1159 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 MAP7Q14244 749 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ZNF569Q5MCW4 686 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 AGAP9Q5VTM2 703 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 KDELC1Q6UW63 502 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 MFSD7Q6UXD7 560 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 KDELC2Q7Z4H8 507 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 PLXDC1Q8IUK5 500 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 VSTM4Q8IW00 320 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 NLGN4XQ8N0W4 816 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 IL22RA1Q8N6P7 574 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 NLGN4YQ8NFZ3 816 aaPredicted RBP12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 C9orf72Q96LT7 481 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SRPK1Q96SB4 655 aaKnown RBP12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TIMM29Q9BSF4 260 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms