RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ZSCAN5AQ9BUG6 496 aa13.94□□□□□ -0.18
UPF3A-204ENST00000475218 GPR63Q9BZJ6 419 aa13.94□□□□□ -0.18
UPF3A-204ENST00000475218 TRIM39Q9HCM9 518 aa13.94□□□□□ -0.18
UPF3A-204ENST00000475218 BPIFA1Q9NP55 256 aa13.94□□□□□ -0.18
UPF3A-204ENST00000475218 PRDM8Q9NQV8 689 aa13.94□□□□□ -0.18
UPF3A-204ENST00000475218 PCDHA3Q9Y5H8 950 aa13.94□□□□□ -0.18
UPF3A-204ENST00000475218 PIEZO2Q9H5I5 2752 aa13.93□□□□□ -0.18
UPF3A-204ENST00000475218 SLC25A14O95258 325 aaPredicted RBP13.93□□□□□ -0.18
UPF3A-204ENST00000475218 WT1P19544 449 aaPredicted RBP13.93□□□□□ -0.18
UPF3A-204ENST00000475218 RBL1P28749 1068 aa13.93□□□□□ -0.18
UPF3A-204ENST00000475218 CYLC1P35663 651 aaPredicted RBP13.93□□□□□ -0.18
UPF3A-204ENST00000475218 SPA17Q15506 151 aa13.93□□□□□ -0.18
UPF3A-204ENST00000475218 ATP13A5Q4VNC0 1218 aa13.93□□□□□ -0.18
UPF3A-204ENST00000475218 C11orf96Q7Z7L8 435 aa13.93□□□□□ -0.18
UPF3A-204ENST00000475218 ZFAND4Q86XD8 727 aa13.93□□□□□ -0.18
UPF3A-204ENST00000475218 DTX1Q86Y01 620 aa13.93□□□□□ -0.18
UPF3A-204ENST00000475218 CCDC50Q8IVM0 306 aa13.93□□□□□ -0.18
UPF3A-204ENST00000475218 ACRBPQ8NEB7 543 aa13.93□□□□□ -0.18
UPF3A-204ENST00000475218 CCDC97Q96F63 343 aaPredicted RBP13.93□□□□□ -0.18
UPF3A-204ENST00000475218 RBM41Q96IZ5 413 aaKnown RBP13.93□□□□□ -0.18
UPF3A-204ENST00000475218 CMKLR1Q99788 373 aa13.93□□□□□ -0.18
UPF3A-204ENST00000475218 IL26Q9NPH9 171 aa13.93□□□□□ -0.18
UPF3A-204ENST00000475218 KCNK4Q9NYG8 393 aa13.93□□□□□ -0.18
UPF3A-204ENST00000475218 IL17CQ9P0M4 197 aa13.93□□□□□ -0.18
UPF3A-204ENST00000475218 ZNF106Q9H2Y7 1883 aaKnown RBP13.93□□□□□ -0.18
UPF3A-204ENST00000475218 BTNL10A8MVZ5 291 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 EPOP01588 193 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 F3P13726 295 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 HMGCLP35914 325 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 CLCNKAP51800 687 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 MAPK10P53779 464 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 UBE2IP63279 158 aaKnown RBP13.92□□□□□ -0.18
UPF3A-204ENST00000475218 HHEXQ03014 270 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 OLIG2Q13516 323 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 PEX6Q13608 980 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 SLC1A5Q15758 541 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 PDPK2PQ6A1A2 396 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 CRTC3Q6UUV7 619 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 PID1Q7Z2X4 250 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 SLC25A41Q8N5S1 370 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 PLEKHG4BQ96PX9 1271 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 FAM118BQ9BPY3 351 aa13.92□□□□□ -0.18
UPF3A-204ENST00000475218 SARS2Q9NP81 518 aaKnown RBP13.92□□□□□ -0.18
UPF3A-204ENST00000475218 KLHL8Q9P2G9 620 aaPredicted RBP13.92□□□□□ -0.18
UPF3A-204ENST00000475218 HELZ2Q9BYK8 2649 aaKnown RBP13.92□□□□□ -0.18
UPF3A-204ENST00000475218 GRID2IPA4D2P6 1211 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 HACD1B0YJ81 288 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 APOC4-APOC2K7ER74 178 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 TK2O00142 265 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 HGSO14964 777 aaPredicted RBP13.91□□□□□ -0.18
UPF3A-204ENST00000475218 PJA2O43164 708 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 MTSS1O43312 755 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 BUD23O43709 281 aaKnown RBP13.91□□□□□ -0.18
UPF3A-204ENST00000475218 SNX2O60749 519 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 APOC2P02655 101 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 BRAFP15056 766 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 CTNNA2P26232 953 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 XRCC4Q13426 336 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 NFATC2Q13469 925 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 PTPRCAPQ14761 206 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 PLA2G4EQ3MJ16 856 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 KIAA1614Q5VZ46 1190 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 TMTC1Q8IUR5 882 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 BMPERQ8N8U9 685 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 ACTL9Q8TC94 416 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 VPS35Q96QK1 796 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 CCNL2Q96S94 520 aaPredicted RBP13.91□□□□□ -0.18
UPF3A-204ENST00000475218 VAT1Q99536 393 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 SEMA4CQ9C0C4 833 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 KLC4Q9NSK0 619 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 OGFRQ9NZT2 677 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 TRIM10Q9UDY6 481 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 LIPCP11150 499 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 PTPN7P35236 360 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 GPLD1P80108 840 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 OTUD4Q01804 1114 aaKnown RBP13.91□□□□□ -0.18
UPF3A-204ENST00000475218 MSLNQ13421 630 aaPredicted RBP13.91□□□□□ -0.18
UPF3A-204ENST00000475218 TMEM71Q6P5X7 295 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 PHYKPLQ8IUZ5 450 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 LSM14AQ8ND56 463 aaKnown RBP13.91□□□□□ -0.18
UPF3A-204ENST00000475218 IPMKQ8NFU5 416 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 TBC1D10AQ9BXI6 508 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 GBA3Q9H227 469 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 RAD18Q9NS91 495 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 OCIAD1Q9NX40 245 aa13.91□□□□□ -0.18
UPF3A-204ENST00000475218 ZNF624Q9P2J8 865 aaPredicted RBP13.91□□□□□ -0.18
UPF3A-204ENST00000475218 TENM4Q6N022 2769 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 GPR89AB7ZAQ6 455 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.9□□□□□ -0.18
UPF3A-204ENST00000475218 ERVH48-1M5A8F1 160 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 UGT1A9O60656 530 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 AGTP01019 485 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 GPR89BP0CG08 455 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 PYGMP11217 842 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 ZNF7P17097 686 aaPredicted RBP13.9□□□□□ -0.18
UPF3A-204ENST00000475218 UGT1A6P19224 532 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 UGT1A1P22309 533 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 UGT1A4P22310 534 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 ADRA1AP35348 466 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 UGT1A3P35503 534 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms