RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 SLC44A4Q53GD3 710 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 C2orf27AQ580R0 203 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 CTSL3PQ5NE16 218 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 LDLRAP1Q5SW96 308 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 PIP5KL1Q5T9C9 394 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 C16orf46Q6P387 395 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 Q6ZVL8 140 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 LRRC34Q8IZ02 419 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 PPP1R14CQ8TAE6 165 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 FAM3CQ92520 227 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 NXNL1Q96CM4 212 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 AP2M1Q96CW1 435 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 DCUN1D1Q96GG9 259 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 DERL2Q9GZP9 239 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 ABCG8Q9H221 673 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 DUSP12Q9UNI6 340 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 FADS3Q9Y5Q0 445 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 BDP1A6H8Y1 2624 aa12.71□□□□□ -0.38
VPS13D-205ENST00000473099 BPTFQ12830 3046 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 WDR91A4D1P6 747 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 TNFRSF10AO00220 468 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 EIF3FO00303 357 aaPredicted RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 KPNA5O15131 536 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 SPINT1O43278 529 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 LZTS3O60299 673 aaPredicted RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 OR1I1O60431 355 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 MAGEC1O60732 1142 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 AP2A2O94973 939 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 SNUPNO95149 360 aaKnown RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 TOP3BO95985 862 aaKnown RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 SERPINE1P05121 402 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 C6P13671 934 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 UGT1A6P19224 532 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 CHRM3P20309 590 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 DRD4P21917 467 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 UGT1A1P22309 533 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 UGT1A4P22310 534 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 DRD3P35462 400 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 UGT1A3P35503 534 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 UGT1A5P35504 534 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 ETV3P41162 512 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 RGS4P49798 205 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 COPAP53621 1224 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 RPS14P62263 151 aaKnown RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 PRKCQQ04759 706 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 ZNF460Q14592 562 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 PCLAFQ15004 111 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 AGERQ15109 404 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 MLF2Q15773 248 aaPredicted RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 TTLL9Q3SXZ7 439 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 SETMARQ53H47 684 aaPredicted RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 TECRLQ5HYJ1 363 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 GPRC6AQ5T6X5 926 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 GKAP1Q5VSY0 366 aaPredicted RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 ZYG11AQ6WRX3 759 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 KBTBD6Q86V97 674 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 SYNPOQ8N3V7 929 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 FSTL5Q8N475 847 aaPredicted RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 HDDC3Q8N4P3 179 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 TXNDC5Q8NBS9 432 aaKnown RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 DDHD1Q8NEL9 900 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 RHEBL1Q8TAI7 183 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 ZNF473Q8WTR7 871 aaKnown RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 BTN2A2Q8WVV5 523 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 INPP5DQ92835 1189 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 FAM131CQ96AQ9 280 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 NUS1Q96E22 293 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 PDLIM5Q96HC4 596 aaKnown RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 GPR78Q96P69 363 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 GPR21Q99679 349 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 WRAP53Q9BUR4 548 aaKnown RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 PITPNM3Q9BZ71 974 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 ZCCHC2Q9C0B9 1178 aaKnown RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 C12orf65Q9H3J6 166 aaKnown RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 LATS2Q9NRM7 1088 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 IGSF5Q9NSI5 407 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 FZD4Q9ULV1 537 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 TMCO1Q9UM00 188 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 MRPS17Q9Y2R5 130 aaKnown RBP12.7□□□□□ -0.38
VPS13D-205ENST00000473099 DHRS7Q9Y394 339 aa12.7□□□□□ -0.38
VPS13D-205ENST00000473099 PLXND1Q9Y4D7 1925 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 NARSO43776 548 aaKnown RBP12.69□□□□□ -0.38
VPS13D-205ENST00000473099 TRIM13O60858 407 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 EDF1O60869 148 aaKnown RBP12.69□□□□□ -0.38
VPS13D-205ENST00000473099 NIPSNAP2O75323 286 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 TM7SF2O76062 418 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 BGNP21810 368 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 ALDH3A1P30838 453 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 AKT1P31749 480 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 METAP1P53582 386 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 IL2P60568 153 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 TIAL1Q01085 375 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS13D-205ENST00000473099 STX3Q13277 289 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 CCINQ13939 588 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 LRRC32Q14392 662 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 CHI3L2Q15782 390 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 AGBL4Q5VU57 503 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 LIPMQ5VYY2 423 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 KIAA1161Q6NSJ0 714 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 ZNF852Q6ZMS4 543 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms