RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 HTR6P50406 440 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 CRY1Q16526 586 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 LRRC26Q2I0M4 334 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 UNC50Q53HI1 259 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 C6orf52Q5T4I8 152 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 C7orf61Q8IZ16 206 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 PDZD8Q8NEN9 1154 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 PNPT1Q8TCS8 783 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 CYGBQ8WWM9 190 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 FEM1CQ96JP0 617 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 TDRD1Q9BXT4 1180 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 PRDM16Q9HAZ2 1276 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 S100A14Q9HCY8 104 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 ADAMTS6Q9UKP5 1117 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 ITM2BQ9Y287 266 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 ZNF711Q9Y462 761 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 POLR3HQ9Y535 204 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 CASP8AP2Q9UKL3 1982 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 LOC285556D6RIA3 1793 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 FFAR2O15552 330 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 SNRPB2P08579 225 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 ZNF7P17097 686 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 ACOX1Q15067 660 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 SF1Q15637 639 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 ZIK1Q3SY52 487 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 DPY19L3Q6ZPD9 716 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 C11orf96Q7Z7L8 435 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 DHDDSQ86SQ9 333 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 SLC22A9Q8IVM8 553 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 WDR87Q6ZQQ6 2873 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 ANTXRLA6NF34 631 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 IGSF6O95976 241 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 HNF4AP41235 474 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 ERVFC1P60507 584 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 ACTR3P61158 418 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 STX5Q13190 355 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 ACAP2Q15057 778 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 SFT2D3Q587I9 215 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 Q6ZVL8 140 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 LRRC49Q8IUZ0 686 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 CLYBLQ8N0X4 340 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 VPS50Q96JG6 964 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 AARSD1Q9BTE6 412 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 USP22Q9UPT9 525 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 DICER1Q9UPY3 1922 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 NDUFAF1Q9Y375 327 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 PDLIM1O00151 329 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 SERPINA4P29622 427 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 HNF1BP35680 557 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 PPP3CCP48454 512 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 RGS4P49798 205 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 BNIPLQ7Z465 357 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 ITIH5Q86UX2 942 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 BADQ92934 168 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 IPPKQ9H8X2 491 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 DNAJC15Q9Y5T4 150 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 SCN10AQ9Y5Y9 1956 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 GLYATL1P3A0A0U1RQE8 302 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 KDELR3O43731 214 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 CLIC3O95833 236 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 IL1BP01584 269 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 STATHP02808 62 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 CD1DP15813 335 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 LEPRP48357 1165 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 UFM1P61960 85 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 CRTC3Q6UUV7 619 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 NET1Q7Z628 596 aaPredicted RBP13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 GPR156Q8NFN8 814 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 LRTOMTQ8WZ04 291 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 DPF3Q92784 378 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 TSEN34Q9BSV6 310 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 SLC46A2Q9BY10 475 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 CFAP20Q9Y6A4 193 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 PRSS21Q9Y6M0 314 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 NTRK1P04629 796 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 HIST1H2AGP0C0S8 130 aaPredicted RBP13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 EPCAMP16422 314 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 HIST1H2ADP20671 130 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 EEF1B2P24534 225 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 CCNHP51946 323 aaPredicted RBP13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 MTPNP58546 118 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 CDC16Q13042 620 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 LRRC66Q68CR7 880 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 REP15Q6BDI9 236 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 RPAINQ86UA6 219 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 FIG4Q92562 907 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 HIST1H2AHQ96KK5 128 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 HIST1H2AJQ99878 128 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 H2AFJQ9BTM1 129 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 PHF24Q9UPV7 400 aa13.61□□□□□ -0.23
CCDC88A-211ENST00000471947 ILVBLA1L0T0 632 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 LEFTY2O00292 366 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 NRP2O60462 931 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 AOC1P19801 751 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 IRS1P35568 1242 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 TTPAP49638 278 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 PRKAA2P54646 552 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 SYTL3Q4VX76 610 aa13.6□□□□□ -0.23
CCDC88A-211ENST00000471947 PABPC1LQ4VXU2 614 aaKnown RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms