RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 TRAM1L1Q8N609 369 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 TADA1Q96BN2 335 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 OLFM3Q96PB7 478 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 HERPUD2Q9BSE4 406 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 OSGEPL1Q9H4B0 414 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 GLOD4Q9HC38 313 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 APMAPQ9HDC9 416 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 BPIFA1Q9NP55 256 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 ABHD10Q9NUJ1 306 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 ZNF711Q9Y462 761 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 SPO11Q9Y5K1 396 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 ZNF462Q96JM2 2506 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 ATMQ13315 3056 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 LRP4O75096 1905 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 ZNF487B1APH4 448 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 PPP1R12AO14974 1030 aaPredicted RBP13.1□□□□□ -0.31
CPSF4-210ENST00000469897 NKX2-8O15522 239 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 CBFA2T2O43439 604 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 PMPCBO75439 489 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 CDK14O94921 469 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 BPIP17213 487 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 TYRP1P17643 537 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 XRCC1P18887 633 aaPredicted RBP13.1□□□□□ -0.31
CPSF4-210ENST00000469897 SLC19A1P41440 591 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 NOP2P46087 812 aaKnown RBP13.1□□□□□ -0.31
CPSF4-210ENST00000469897 EPHA4P54764 986 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 SEPT7Q16181 437 aaKnown RBP13.1□□□□□ -0.31
CPSF4-210ENST00000469897 PLA2G4EQ3MJ16 856 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 LRRC38Q5VT99 294 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 BORAQ6PGQ7 559 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 MFSD7Q6UXD7 560 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 TIPARPQ7Z3E1 657 aaKnown RBP13.1□□□□□ -0.31
CPSF4-210ENST00000469897 RHOT2Q8IXI1 618 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 RHOT1Q8IXI2 618 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 NLGN4XQ8N0W4 816 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 NLGN4YQ8NFZ3 816 aaPredicted RBP13.1□□□□□ -0.31
CPSF4-210ENST00000469897 GLYATL1Q969I3 302 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 ZSCAN5AQ9BUG6 496 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 TRIM4Q9C037 500 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 CLMPQ9H6B4 373 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 FBXO8Q9NRD0 319 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 RAD18Q9NS91 495 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 GEMIN8Q9NWZ8 242 aaKnown RBP13.1□□□□□ -0.31
CPSF4-210ENST00000469897 ZNF624Q9P2J8 865 aaPredicted RBP13.1□□□□□ -0.31
CPSF4-210ENST00000469897 TRIM10Q9UDY6 481 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 DNAJC16Q9Y2G8 782 aa13.1□□□□□ -0.31
CPSF4-210ENST00000469897 LOC101059948A0A1B0GTJ6 334 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 CHUKO15111 745 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 POLR1CO15160 346 aaPredicted RBP13.09□□□□□ -0.31
CPSF4-210ENST00000469897 KMOO15229 486 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 SUV39H1O43463 412 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 MTA2O94776 668 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 NDST3O95803 873 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 VIPP01282 170 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 ZNF7P17097 686 aaPredicted RBP13.09□□□□□ -0.31
CPSF4-210ENST00000469897 COMTP21964 271 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 RPL10P27635 214 aaKnown RBP13.09□□□□□ -0.31
CPSF4-210ENST00000469897 MAP4P27816 1152 aaKnown RBP13.09□□□□□ -0.31
CPSF4-210ENST00000469897 CLCNKAP51800 687 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 UBE2IP63279 158 aaKnown RBP13.09□□□□□ -0.31
CPSF4-210ENST00000469897 TRIM14Q14142 442 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 INSCQ1MX18 579 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 KHDC1Q4VXA5 237 aaKnown RBP13.09□□□□□ -0.31
CPSF4-210ENST00000469897 CEACAM20Q6UY09 585 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 LRRTM4Q86VH4 590 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 VSIG1Q86XK7 387 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 PLXDC1Q8IUK5 500 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 VSTM4Q8IW00 320 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 RNF31Q96EP0 1072 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 TEKT5Q96M29 485 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 TEFMQ96QE5 360 aaKnown RBP13.09□□□□□ -0.31
CPSF4-210ENST00000469897 SLC25A18Q9H1K4 315 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 DDX56Q9NY93 547 aaKnown RBP13.09□□□□□ -0.31
CPSF4-210ENST00000469897 OGFRQ9NZT2 677 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 IL17BQ9UHF5 180 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 TMPRSS11EQ9UL52 423 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 SLC30A1Q9Y6M5 507 aa13.09□□□□□ -0.31
CPSF4-210ENST00000469897 HELZ2Q9BYK8 2649 aaKnown RBP13.09□□□□□ -0.31
CPSF4-210ENST00000469897 ANKRD36A6QL64 1941 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 A0A0A6YYK5 440 aaPredicted RBP13.08□□□□□ -0.32
CPSF4-210ENST00000469897 PDZK1P1A8MUH7 402 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 VEGFDO43915 354 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 MFAP3LO75121 409 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 STK17BO94768 372 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 UBXN7O94888 489 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 TPM1P09493 284 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 AMD1P17707 334 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 PTPN3P26045 913 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 CD68P34810 354 aaPredicted RBP13.08□□□□□ -0.32
CPSF4-210ENST00000469897 SLC1A1P43005 524 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 NR2C2P49116 596 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 SEPHS1P49903 392 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 DRG2P55039 364 aaKnown RBP13.08□□□□□ -0.32
CPSF4-210ENST00000469897 GFERP55789 205 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 DCDC1P59894 354 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 FOXM1Q08050 763 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 ADCY2Q08462 1091 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 WASHC5Q12768 1159 aa13.08□□□□□ -0.32
CPSF4-210ENST00000469897 TMEM115Q12893 351 aaPredicted RBP13.08□□□□□ -0.32
CPSF4-210ENST00000469897 NOMO1Q15155 1222 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms