RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 MCOLN3Q8TDD5 553 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 OTUD5Q96G74 571 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 TBCDQ9BTW9 1192 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 FSD1LQ9BXM9 530 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 WDR6Q9NNW5 1121 aaKnown RBP11.63□□□□□ -0.55
CPSF3-202ENST00000460593 NDFIP2Q9NV92 336 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 NSMCE4AQ9NXX6 385 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 IFT52Q9Y366 437 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 COL4A5P29400 1685 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 CCDC154A6NI56 674 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 GNGT2O14610 69 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 USP17L7P0C7H9 530 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 PRSS56P0CW18 603 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 LBPP18428 481 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 ALDH7A1P49419 539 aaKnown RBP11.62□□□□□ -0.55
CPSF3-202ENST00000460593 ARSDP51689 593 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 TKTL1P51854 596 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 MAXP61244 160 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 SIM2Q14190 667 aaPredicted RBP11.62□□□□□ -0.55
CPSF3-202ENST00000460593 OR4D1Q15615 310 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 CLPPQ16740 277 aaPredicted RBP11.62□□□□□ -0.55
CPSF3-202ENST00000460593 HIST2H2ACQ16777 129 aaPredicted RBP11.62□□□□□ -0.55
CPSF3-202ENST00000460593 FAM209AQ5JX71 171 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 IRAK1BP1Q5VVH5 260 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 STEAP3Q658P3 488 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 SAMD7Q7Z3H4 446 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 GATAD2AQ86YP4 633 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 ZDHHC13Q8IUH4 622 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 MMAAQ8IVH4 418 aaKnown RBP11.62□□□□□ -0.55
CPSF3-202ENST00000460593 CNTN4Q8IWV2 1026 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 OR13J1Q8NGT2 312 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 ITFG1Q8TB96 612 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 STON2Q8WXE9 905 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 EFHD2Q96C19 240 aaPredicted RBP11.62□□□□□ -0.55
CPSF3-202ENST00000460593 ULBP1Q9BZM6 244 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 NEK6Q9HC98 313 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 PDGFCQ9NRA1 345 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 SDR39U1Q9NRG7 319 aaPredicted RBP11.62□□□□□ -0.55
CPSF3-202ENST00000460593 TBC1D14Q9P2M4 693 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 OR12D3Q9UGF7 316 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 TSR3Q9UJK0 312 aaKnown RBP11.62□□□□□ -0.55
CPSF3-202ENST00000460593 MYLKQ15746 1914 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 NOTOA8MTQ0 251 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 EIF3FO00303 357 aaPredicted RBP11.62□□□□□ -0.55
CPSF3-202ENST00000460593 ENPP3O14638 875 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 TBC1D4O60343 1298 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 CRCPO75575 148 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 CDH1P12830 882 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 INSRRP14616 1297 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 GGT5P36269 586 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 ZFP36L2P47974 494 aaKnown RBP11.62□□□□□ -0.55
CPSF3-202ENST00000460593 HNRNPFP52597 415 aaKnown RBP11.62□□□□□ -0.55
CPSF3-202ENST00000460593 RSBN1Q5VWQ0 802 aaPredicted RBP11.62□□□□□ -0.55
CPSF3-202ENST00000460593 SULT1C3Q6IMI6 304 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 TTC30BQ8N4P2 665 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 HDAC2Q92769 488 aaKnown RBP11.62□□□□□ -0.55
CPSF3-202ENST00000460593 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.62□□□□□ -0.55
CPSF3-202ENST00000460593 DMRTB1Q96MA1 342 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 GAD1Q99259 594 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 CLSTN3Q9BQT9 956 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 TKTL2Q9H0I9 626 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 RMND5AQ9H871 391 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 UGT2A1Q9Y4X1 527 aa11.62□□□□□ -0.55
CPSF3-202ENST00000460593 A0A1W2PP18 115 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 C16orf96A6NNT2 1141 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 DEAF1O75398 565 aaPredicted RBP11.61□□□□□ -0.55
CPSF3-202ENST00000460593 DAB1O75553 588 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 MFN2O95140 757 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 CHRNA1P02708 482 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 ENO2P09104 434 aaPredicted RBP11.61□□□□□ -0.55
CPSF3-202ENST00000460593 C7P10643 843 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 SNX16P57768 344 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 NRG1Q02297 640 aaPredicted RBP11.61□□□□□ -0.55
CPSF3-202ENST00000460593 RBM48Q5RL73 367 aaKnown RBP11.61□□□□□ -0.55
CPSF3-202ENST00000460593 PPP2R2DQ66LE6 453 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 OSTM1Q86WC4 334 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 LYSMD2Q8IV50 215 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 SYTL1Q8IYJ3 562 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 SIX5Q8N196 739 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 FLAD1Q8NFF5 587 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 ATL1Q8WXF7 558 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 UBE2FQ969M7 185 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 CDK15Q96Q40 435 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 BARD1Q99728 777 aaKnown RBP11.61□□□□□ -0.55
CPSF3-202ENST00000460593 MED10Q9BTT4 135 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 C6orf62Q9GZU0 229 aaPredicted RBP11.61□□□□□ -0.55
CPSF3-202ENST00000460593 MYOZ2Q9NPC6 264 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 GPR45Q9Y5Y3 372 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 ASNA1O43681 348 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 NUAK1O60285 661 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 RFPL2O75678 378 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 CST1P01037 141 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 RBP1P09455 135 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 PFKLP17858 780 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 CD6P30203 668 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 AGTR2P50052 363 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 KPNA2P52292 529 aaKnown RBP11.61□□□□□ -0.55
CPSF3-202ENST00000460593 TNFAIP2Q03169 654 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 EPS8Q12929 822 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 RAPSNQ13702 412 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms