RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 UNC13CQ8NB66 2214 aa18.47■□□□□ 0.55
USP39-209ENST00000458268 ZNF106Q9H2Y7 1883 aaKnown RBP18.46■□□□□ 0.55
USP39-209ENST00000458268 PRAMEF1O95521 474 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 EML2O95834 649 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 OR1D5P58170 312 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 GABREP78334 506 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 ITGA9Q13797 1035 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 OASLQ15646 514 aaKnown RBP18.46■□□□□ 0.55
USP39-209ENST00000458268 ISXQ2M1V0 245 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 MAP9Q49MG5 647 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 ZDHHC20Q5W0Z9 365 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 PPP1R21Q6ZMI0 780 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 MICALCLQ6ZW33 695 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 DET1Q7L5Y6 550 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 DNAAF3Q8N9W5 541 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 KDF1Q8NAX2 398 aaPredicted RBP18.46■□□□□ 0.55
USP39-209ENST00000458268 NAT14Q8WUY8 206 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 FRMD8P1Q9BZ68 369 aaPredicted RBP18.46■□□□□ 0.55
USP39-209ENST00000458268 FAM96AQ9H5X1 160 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 RMI1Q9H9A7 625 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 TMPRSS11EQ9UL52 423 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 RAXQ9Y2V3 346 aa18.46■□□□□ 0.55
USP39-209ENST00000458268 COL27A1Q8IZC6 1860 aaPredicted RBP18.46■□□□□ 0.54
USP39-209ENST00000458268 A0A1W2PQM1 296 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 OR2AG2A6NM03 316 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 PDZK1P1A8MUH7 402 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 ZSCAN12O43309 604 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 STIP1P31948 543 aaKnown RBP18.45■□□□□ 0.54
USP39-209ENST00000458268 MAPK9P45984 424 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 KCNJ1P48048 391 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 GPRC6AQ5T6X5 926 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 SPRED1Q7Z699 444 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 SLC35F6Q8N357 371 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 OR52K1Q8NGK4 314 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 BRSK1Q8TDC3 778 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 SLC37A2Q8TED4 501 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 UBE2Q2Q8WVN8 375 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 MAIP1Q8WWC4 291 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 VPS35Q96QK1 796 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 ASB8Q9H765 288 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 ETNK1Q9HBU6 452 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 PRDM8Q9NQV8 689 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 RAB6BQ9NRW1 208 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 WDR70Q9NW82 654 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 TBC1D29Q9UFV1 150 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 CRLS1Q9UJA2 301 aa18.45■□□□□ 0.54
USP39-209ENST00000458268 D6RAR5 112 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 KMOO15229 486 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 PSMD3O43242 534 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 NUDT21O43809 227 aaKnown RBP18.44■□□□□ 0.54
USP39-209ENST00000458268 VEGFDO43915 354 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 BRINP1O60477 761 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 AP2A1O95782 977 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 ZSCAN5DPP0CG00 497 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 MSH3P20585 1137 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 CA5AP35218 305 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 TMEM115Q12893 351 aaPredicted RBP18.44■□□□□ 0.54
USP39-209ENST00000458268 NFATC2Q13469 925 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 SIX1Q15475 284 aaPredicted RBP18.44■□□□□ 0.54
USP39-209ENST00000458268 PHF19Q5T6S3 580 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 DENND5AQ6IQ26 1287 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 USP53Q70EK8 1073 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 B3GNT8Q7Z7M8 397 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 PROSER1Q86XN7 944 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 GLIS1Q8NBF1 620 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 WDR48Q8TAF3 677 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 ZNF398Q8TD17 642 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 DNAJC1Q96KC8 554 aaKnown RBP18.44■□□□□ 0.54
USP39-209ENST00000458268 ZCCHC2Q9C0B9 1178 aaKnown RBP18.44■□□□□ 0.54
USP39-209ENST00000458268 STN1Q9H668 368 aaKnown RBP18.44■□□□□ 0.54
USP39-209ENST00000458268 RDH14Q9HBH5 336 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 SLC23A2Q9UGH3 650 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 SATB2Q9UPW6 733 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 ENTPD2Q9Y5L3 495 aa18.44■□□□□ 0.54
USP39-209ENST00000458268 SRRM3A6NNA2 597 aaPredicted RBP18.43■□□□□ 0.54
USP39-209ENST00000458268 TAF4O00268 1085 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 PPM1DO15297 605 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 PPFIA2O75334 1257 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 TCEA3O75764 348 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 SRP72O76094 671 aaKnown RBP18.43■□□□□ 0.54
USP39-209ENST00000458268 GAS8O95995 478 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 ZNF7P17097 686 aaPredicted RBP18.43■□□□□ 0.54
USP39-209ENST00000458268 FDFT1P37268 417 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 BASP1P80723 227 aaKnown RBP18.43■□□□□ 0.54
USP39-209ENST00000458268 PDE1BQ01064 536 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 CCNG2Q16589 344 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 CCDC38Q502W7 563 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 ZRANB3Q5FWF4 1079 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 LDLRAP1Q5SW96 308 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 NKAIN2Q5VXU1 208 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 KCTD11Q693B1 232 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 REXO1L1PQ8IX06 675 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 MS4A14Q96JA4 679 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 SLC38A3Q99624 504 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 NRSN2Q9GZP1 204 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 KCNK4Q9NYG8 393 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 SMARCAL1Q9NZC9 954 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 APPL1Q9UKG1 709 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 SLC30A1Q9Y6M5 507 aa18.43■□□□□ 0.54
USP39-209ENST00000458268 EPG5Q9HCE0 2579 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms