RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.33□□□□□ -0.44
CPSF4-208ENST00000452047 EPN1Q9Y6I3 576 aaPredicted RBP12.33□□□□□ -0.44
CPSF4-208ENST00000452047 DUSP10Q9Y6W6 482 aa12.33□□□□□ -0.44
CPSF4-208ENST00000452047 TRBV23OR9-2A0A075B6M9 112 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 PRR19A6NJB7 356 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 BTNL10A8MVZ5 291 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 F5H423 210 aaPredicted RBP12.32□□□□□ -0.44
CPSF4-208ENST00000452047 APOC4-APOC2K7ER74 178 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 EFSO43281 561 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 APOC2P02655 101 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 LIPCP11150 499 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 CCL4P13236 92 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 CHRNA4P43681 627 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 ARSDP51689 593 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 CLCNKAP51800 687 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 COPS2P61201 443 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 RHDQ02161 417 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 HHEXQ03014 270 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 XRCC4Q13426 336 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 TGIF1Q15583 401 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 KHDC1Q4VXA5 237 aaKnown RBP12.32□□□□□ -0.44
CPSF4-208ENST00000452047 CCDC70Q6NSX1 233 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 RAD9BQ6WBX8 426 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 TMTC1Q8IUR5 882 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 ZNF547Q8IVP9 402 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 TTC30BQ8N4P2 665 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 TTC9Q92623 222 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 USP7Q93009 1102 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 VPS35Q96QK1 796 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 CCNL2Q96S94 520 aaPredicted RBP12.32□□□□□ -0.44
CPSF4-208ENST00000452047 DPYSL5Q9BPU6 564 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 GORASP1Q9BQQ3 440 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 HEMGNQ9BXL5 484 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 B3GNT4Q9C0J1 378 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 TRABDQ9H4I3 376 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.32□□□□□ -0.44
CPSF4-208ENST00000452047 PDP2Q9P2J9 529 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 SLC23A2Q9UGH3 650 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 EFR3BQ9Y2G0 817 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 PCDHA3Q9Y5H8 950 aa12.32□□□□□ -0.44
CPSF4-208ENST00000452047 BSNQ9UPA5 3926 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 KIR2DS5A0A0G2JLQ3 304 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 A0A0G2JNG1 304 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 EIF4E1BA6NMX2 242 aaKnown RBP12.31□□□□□ -0.44
CPSF4-208ENST00000452047 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.31□□□□□ -0.44
CPSF4-208ENST00000452047 KIR2DS3K7RE56 304 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 PJA2O43164 708 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 DUX1O43812 170 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 MTX2O75431 263 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 FGF3P11487 239 aaPredicted RBP12.31□□□□□ -0.44
CPSF4-208ENST00000452047 MPSTP25325 297 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 PTPN7P35236 360 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 MAPK10P53779 464 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 UBE2IP63279 158 aaKnown RBP12.31□□□□□ -0.44
CPSF4-208ENST00000452047 SRSF6Q13247 344 aaKnown RBP12.31□□□□□ -0.44
CPSF4-208ENST00000452047 KIR2DS5Q14953 304 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 SLC1A5Q15758 541 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 ATP13A5Q4VNC0 1218 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 TMEM71Q6P5X7 295 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 CRTC3Q6UUV7 619 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 CCDC81Q6ZN84 652 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 PID1Q7Z2X4 250 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 DTX1Q86Y01 620 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 LRRC57Q8N9N7 239 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 OR10G6Q8NH81 332 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 PMEPA1Q969W9 287 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 WBP1Q96G27 269 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 CALR3Q96L12 384 aaKnown RBP12.31□□□□□ -0.44
CPSF4-208ENST00000452047 SLC38A3Q99624 504 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 TIMM29Q9BSF4 260 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 LACRTQ9GZZ8 138 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 BPIFA1Q9NP55 256 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 IL26Q9NPH9 171 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 PRDM8Q9NQV8 689 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 KLC4Q9NSK0 619 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 AKAP7Q9P0M2 348 aaPredicted RBP12.31□□□□□ -0.44
CPSF4-208ENST00000452047 IL17CQ9P0M4 197 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 TRHDEQ9UKU6 1024 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 ZNF462Q96JM2 2506 aa12.31□□□□□ -0.44
CPSF4-208ENST00000452047 OR5K4A6NMS3 321 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 GAPDHSO14556 408 aaPredicted RBP12.3□□□□□ -0.44
CPSF4-208ENST00000452047 KMOO15229 486 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 VEGFDO43915 354 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 SNX2O60749 519 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 SLC2A4P14672 509 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 HLA-DPA1P20036 260 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 CTNNA2P26232 953 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 CD82P27701 267 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 RBL1P28749 1068 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 EPHA4P54764 986 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 OTUD4Q01804 1114 aaKnown RBP12.3□□□□□ -0.44
CPSF4-208ENST00000452047 MPP3Q13368 585 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 NFATC2Q13469 925 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 WDR74Q6RFH5 385 aaPredicted RBP12.3□□□□□ -0.44
CPSF4-208ENST00000452047 C11orf96Q7Z7L8 435 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 SLC9B2Q86UD5 537 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 LRRTM4Q86VH4 590 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 ZFAND4Q86XD8 727 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 GAS2L3Q86XJ1 694 aa12.3□□□□□ -0.44
CPSF4-208ENST00000452047 TMEM139Q8IV31 216 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms