RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 RAXQ9Y2V3 346 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 KIF26BQ2KJY2 2108 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 DMXL2Q8TDJ6 3036 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 PKD1L2Q7Z442 2459 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 COL27A1Q8IZC6 1860 aaPredicted RBP15□□□□□ -0.01
LIMS3-201ENST00000437679 BRINP1O60477 761 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 UGT1A9O60656 530 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 SNX2O60749 519 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 IFNB1P01574 187 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 UGT1A6P19224 532 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 UGT1A1P22309 533 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 UGT1A4P22310 534 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 ALDH4A1P30038 563 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 UGT1A3P35503 534 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 UGT1A5P35504 534 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 GPR3P46089 330 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 LSSP48449 732 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 INHBCP55103 352 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 B4GALNT1Q00973 533 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 TMEM115Q12893 351 aaPredicted RBP15□□□□□ -0.01
LIMS3-201ENST00000437679 PTPRCAPQ14761 206 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 INSCQ1MX18 579 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 LDLRAP1Q5SW96 308 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 KCTD11Q693B1 232 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 DENND5AQ6IQ26 1287 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 TAB3Q8N5C8 712 aaPredicted RBP15□□□□□ -0.01
LIMS3-201ENST00000437679 OR4K2Q8NGD2 314 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 ZNF398Q8TD17 642 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 TLR10Q9BXR5 811 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 STRADBQ9C0K7 418 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 OSGEPL1Q9H4B0 414 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 STN1Q9H668 368 aaKnown RBP15□□□□□ -0.01
LIMS3-201ENST00000437679 POLR1BQ9H9Y6 1135 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 UGT1A7Q9HAW7 530 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 UGT1A10Q9HAW8 530 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 UGT1A8Q9HAW9 530 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 KLC4Q9NSK0 619 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 TBC1D29Q9UFV1 150 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 SATB2Q9UPW6 733 aa15□□□□□ -0.01
LIMS3-201ENST00000437679 TRBV23OR9-2A0A075B6M9 112 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 CCDC187A0A096LP49 1063 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 PPM1DO15297 605 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 B4GAT1O43505 415 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 CEP104O60308 925 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 PRAMEF1O95521 474 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 AP2A1O95782 977 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 F3P13726 295 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 ZNF7P17097 686 aaPredicted RBP14.99□□□□□ -0.01
LIMS3-201ENST00000437679 FDFT1P37268 417 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 LMAN1P49257 510 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 CLCNKAP51800 687 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 PDX1P52945 283 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 OR1D5P58170 312 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 NR1D2Q14995 579 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 PLA2G4EQ3MJ16 856 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 AMZ1Q400G9 498 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 MAP9Q49MG5 647 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 KHDC1Q4VXA5 237 aaKnown RBP14.99□□□□□ -0.01
LIMS3-201ENST00000437679 C3orf38Q5JPI3 329 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 LINC00523Q86TU6 105 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 TRAPPC5Q8IUR0 188 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 SFRP1Q8N474 314 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 CCDC89Q8N998 374 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 WDR36Q8NI36 951 aaKnown RBP14.99□□□□□ -0.01
LIMS3-201ENST00000437679 SLC37A2Q8TED4 501 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 TIMM29Q9BSF4 260 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 EPB41L5Q9HCM4 733 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 SMOXQ9NWM0 555 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 FKBPLQ9UIM3 349 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 ATXN7L1Q9ULK2 861 aaPredicted RBP14.99□□□□□ -0.01
LIMS3-201ENST00000437679 ZKSCAN5Q9Y2L8 839 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 KCTD3Q9Y597 815 aa14.99□□□□□ -0.01
LIMS3-201ENST00000437679 KIR2DS5A0A0G2JLQ3 304 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 A0A0G2JNG1 304 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 OR5K4A6NMS3 321 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 ERI2A8K979 691 aaKnown RBP14.98□□□□□ -0.01
LIMS3-201ENST00000437679 E7EVH7 732 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 KIR2DS3K7RE56 304 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 GAPDHSO14556 408 aaPredicted RBP14.98□□□□□ -0.01
LIMS3-201ENST00000437679 KRT37O76014 449 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 SRP72O76094 671 aaKnown RBP14.98□□□□□ -0.01
LIMS3-201ENST00000437679 CPNE6O95741 557 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 EML2O95834 649 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 FGGP02679 453 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 VCLP18206 1134 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 RBMS1P29558 406 aaKnown RBP14.98□□□□□ -0.01
LIMS3-201ENST00000437679 CCKBRP32239 447 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 HADHAP40939 763 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 FASLGP48023 281 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 ZNF140P52738 457 aaPredicted RBP14.98□□□□□ -0.01
LIMS3-201ENST00000437679 EIF3IQ13347 325 aaKnown RBP14.98□□□□□ -0.01
LIMS3-201ENST00000437679 MSLNQ13421 630 aaPredicted RBP14.98□□□□□ -0.01
LIMS3-201ENST00000437679 KIR2DS5Q14953 304 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 CCNG2Q16589 344 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 CLPPQ16740 277 aaPredicted RBP14.98□□□□□ -0.01
LIMS3-201ENST00000437679 LONRF2Q1L5Z9 754 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 TBC1D25Q3MII6 688 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 GPRC6AQ5T6X5 926 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 IYDQ6PHW0 289 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 FOXR1Q6PIV2 292 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms