RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 ANKRD27Q96NW4 1050 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 GPR20Q99678 358 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 SNX10Q9Y5X0 201 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 C2orf71A6NGG8 1288 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 NRP2O60462 931 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 PPIBP23284 216 aaKnown RBP15.3■□□□□ 0.04
PTPRF-206ENST00000429895 PTDSS1P48651 473 aaKnown RBP15.3■□□□□ 0.04
PTPRF-206ENST00000429895 IL18R1Q13478 541 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 HSDL1Q3SXM5 330 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 ATP13A5Q4VNC0 1218 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 SPPL2CQ8IUH8 684 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 LRMDAQ9H2I8 198 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 SERPINA1P01009 418 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 PKMP14618 531 aaKnown RBP15.3■□□□□ 0.04
PTPRF-206ENST00000429895 IL12BP29460 328 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 CACNG1Q06432 222 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 PDK4Q16654 411 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 HID1Q8IV36 788 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 UNC5BQ8IZJ1 945 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 SFRP1Q8N474 314 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 CHST4Q8NCG5 386 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 FAR1Q8WVX9 515 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 SLC38A3Q99624 504 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 PRMT5O14744 637 aaPredicted RBP15.3■□□□□ 0.04
PTPRF-206ENST00000429895 TPST2O60704 377 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 ABHD2P08910 425 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 RPL17P18621 184 aaKnown RBP15.3■□□□□ 0.04
PTPRF-206ENST00000429895 MTHFRP42898 656 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 DNASE1L1P49184 302 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 PGDP52209 483 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 XKR4Q5GH76 650 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 LRRC55Q6ZSA7 311 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 GALNT7Q86SF2 657 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 AGAP11Q8TF27 550 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 LCN9Q8WX39 176 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 NOL11Q9H8H0 719 aaKnown RBP15.3■□□□□ 0.04
PTPRF-206ENST00000429895 SLCO1B3Q9NPD5 702 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 HCN1O60741 890 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 SNUPNO95149 360 aaKnown RBP15.3■□□□□ 0.04
PTPRF-206ENST00000429895 LAMP2P13473 410 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 PAX7P23759 505 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 CDK9P50750 372 aaKnown RBP15.3■□□□□ 0.04
PTPRF-206ENST00000429895 KCNJ2P63252 427 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 SP2Q02086 613 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 GCNT6Q5T4J0 391 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 ADGRG6Q86SQ4 1221 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 XYLT1Q86Y38 959 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 ARL14EPQ8N8R7 260 aaPredicted RBP15.3■□□□□ 0.04
PTPRF-206ENST00000429895 OR5T3Q8NGG3 340 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 BTBD19C9JJ37 291 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 CLDN4O14493 209 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 RSL1D1O76021 490 aaKnown RBP15.29■□□□□ 0.04
PTPRF-206ENST00000429895 RGS20O76081 388 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 PRNPP04156 253 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 SPATA31C1P0DKV0 1188 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 IL12AP29459 219 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 EVX2Q03828 476 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 FOLH1Q04609 750 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 HKDC1Q2TB90 917 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 VITQ6UXI7 678 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 RNF19BQ6ZMZ0 732 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 CSPG4P5Q96PW8 444 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 RNPEPL1Q9HAU8 725 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 MARK1Q9P0L2 795 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 RCCD1A6NED2 376 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 UNC5CO95185 931 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 GNALP38405 381 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 HSPA7P48741 367 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 POLR2JP52435 117 aaKnown RBP15.29■□□□□ 0.04
PTPRF-206ENST00000429895 DUSP28Q4G0W2 176 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 SULT1C3Q6IMI6 304 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 NXNL1Q96CM4 212 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 PRAMEF1O95521 474 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 YAP1P46937 504 aaKnown RBP15.29■□□□□ 0.04
PTPRF-206ENST00000429895 DUPD1Q68J44 220 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 FRRS1Q6ZNA5 592 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 TMC8Q8IU68 726 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 TAPBPLQ9BX59 468 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 MARCH7Q9H992 704 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 DERAQ9Y315 318 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 PCDHB1Q9Y5F3 818 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 ADAMTS13Q76LX8 1427 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 AREL1O15033 823 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 DHX15O43143 795 aaKnown RBP15.29■□□□□ 0.04
PTPRF-206ENST00000429895 TSHRP16473 764 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 GNPDA1P46926 289 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 PDX1P52945 283 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 AMZ1Q400G9 498 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 TCAIMQ8N3R3 496 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 OR7D4Q8NG98 312 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 RPL10LQ96L21 214 aaKnown RBP15.29■□□□□ 0.04
PTPRF-206ENST00000429895 DPEP3Q9H4B8 488 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 PCDHGC4Q9Y5F7 938 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 DISP2A7MBM2 1401 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 BCL9O00512 1426 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 CCDC162PA2VCL2 907 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 LRRC72A6NJI9 287 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 ACRP10323 421 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 TCF4P15884 667 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 ILF3Q12906 894 aaKnown RBP eCLIP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms