RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 C2CD4AQ8NCU7 369 aaPredicted RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 DDHD1Q8NEL9 900 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 CEP76Q8TAP6 659 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 MTBPQ96DY7 904 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 TRIM56Q9BRZ2 755 aaKnown RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 FUT8Q9BYC5 575 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 CENPHQ9H3R5 247 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 RMI1Q9H9A7 625 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 UGT1A7Q9HAW7 530 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 UGT1A10Q9HAW8 530 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 UGT1A8Q9HAW9 530 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 FZD3Q9NPG1 666 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 IL1RAPL1Q9NZN1 696 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 PSMC3IPQ9P2W1 217 aaPredicted RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 MBD1Q9UIS9 605 aaPredicted RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 PIKFYVEQ9Y2I7 2098 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 SMIM23A6NLE4 172 aa10□□□□□ -0.81
CD44-207ENST00000425428 BCAT2O15382 392 aaPredicted RBP10□□□□□ -0.81
CD44-207ENST00000425428 OPA1O60313 960 aa10□□□□□ -0.81
CD44-207ENST00000425428 VPS26AO75436 327 aa10□□□□□ -0.81
CD44-207ENST00000425428 GSTM1P09488 218 aa10□□□□□ -0.81
CD44-207ENST00000425428 ATP1B2P14415 290 aaPredicted RBP10□□□□□ -0.81
CD44-207ENST00000425428 KIAA1024LP59773 190 aa10□□□□□ -0.81
CD44-207ENST00000425428 GSTM4Q03013 218 aa10□□□□□ -0.81
CD44-207ENST00000425428 TMEM115Q12893 351 aaPredicted RBP10□□□□□ -0.81
CD44-207ENST00000425428 TMED2Q15363 201 aa10□□□□□ -0.81
CD44-207ENST00000425428 TYSND1Q2T9J0 566 aa10□□□□□ -0.81
CD44-207ENST00000425428 PMS2CLQ68D20 193 aa10□□□□□ -0.81
CD44-207ENST00000425428 PSAPL1Q6NUJ1 521 aa10□□□□□ -0.81
CD44-207ENST00000425428 FBXO38Q6PIJ6 1188 aa10□□□□□ -0.81
CD44-207ENST00000425428 DOK6Q6PKX4 331 aa10□□□□□ -0.81
CD44-207ENST00000425428 LRIG3Q6UXM1 1119 aa10□□□□□ -0.81
CD44-207ENST00000425428 Q6ZSR6 202 aa10□□□□□ -0.81
CD44-207ENST00000425428 ARMCX6Q7L4S7 300 aa10□□□□□ -0.81
CD44-207ENST00000425428 FRMD1Q8N878 549 aa10□□□□□ -0.81
CD44-207ENST00000425428 GPATCH11Q8N954 259 aa10□□□□□ -0.81
CD44-207ENST00000425428 WDR92Q96MX6 357 aa10□□□□□ -0.81
CD44-207ENST00000425428 PAFAH2Q99487 392 aa10□□□□□ -0.81
CD44-207ENST00000425428 AGAP2Q99490 1192 aa10□□□□□ -0.81
CD44-207ENST00000425428 TEX101Q9BY14 249 aa10□□□□□ -0.81
CD44-207ENST00000425428 VIPAS39Q9H9C1 493 aa10□□□□□ -0.81
CD44-207ENST00000425428 FBXO6Q9NRD1 293 aaPredicted RBP10□□□□□ -0.81
CD44-207ENST00000425428 ZNF180Q9UJW8 692 aa10□□□□□ -0.81
CD44-207ENST00000425428 CRYL1Q9Y2S2 319 aa10□□□□□ -0.81
CD44-207ENST00000425428 GON4LQ3T8J9 2241 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 TRBV5-4A0A0C4DH59 114 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 A0A1B0GTW7 788 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 PABPN1LA6NDY0 278 aaKnown RBP9.99□□□□□ -0.81
CD44-207ENST00000425428 H3BM21 787 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 RGS16O15492 202 aaPredicted RBP9.99□□□□□ -0.81
CD44-207ENST00000425428 SNRPAP09012 282 aaKnown RBP9.99□□□□□ -0.81
CD44-207ENST00000425428 THEGLP0DJG4 465 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 TDGF1P13385 188 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 KRT15P19012 456 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 CHRM3P20309 590 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 BCKDHBP21953 392 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 FMO4P31512 558 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 HOXD12P35452 270 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 IGFALSP35858 605 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 TRIM23P36406 574 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 SKIV2L2P42285 1042 aaKnown RBP9.99□□□□□ -0.81
CD44-207ENST00000425428 PDE1CQ14123 709 aaPredicted RBP9.99□□□□□ -0.81
CD44-207ENST00000425428 NFATC4Q14934 902 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 DBN1Q16643 649 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 TTLL9Q3SXZ7 439 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 KRT71Q3SY84 523 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 HSP90B2PQ58FF3 399 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 FAM45BPQ6NSW5 357 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 ENPP7Q6UWV6 458 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 PACS1Q6VY07 963 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 RFLNAQ6ZTI6 216 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 RAPH1Q70E73 1250 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 GALNT13Q8IUC8 556 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 TRAPPC5Q8IUR0 188 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 DENND6AQ8IWF6 608 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 MAML2Q8IZL2 1156 aaPredicted RBP9.99□□□□□ -0.81
CD44-207ENST00000425428 FAM45AQ8TCE6 357 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 DNASE2BQ8WZ79 361 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 LOXL4Q96JB6 756 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 ELMO2Q96JJ3 720 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 ZC3H10Q96K80 434 aaKnown RBP9.99□□□□□ -0.81
CD44-207ENST00000425428 WDR83Q9BRX9 315 aaKnown RBP9.99□□□□□ -0.81
CD44-207ENST00000425428 RHOJQ9H4E5 214 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 MBNL1Q9NR56 388 aaKnown RBP9.99□□□□□ -0.81
CD44-207ENST00000425428 TAS2R13Q9NYV9 303 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 KLQ9UEF7 1012 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 ZNHIT2Q9UHR6 403 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 TLK1Q9UKI8 766 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 OR1A2Q9Y585 309 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 PLXNB3Q9ULL4 1909 aa9.99□□□□□ -0.81
CD44-207ENST00000425428 AGAP14A8MT82 685 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 FADS2P1A8MWK0 482 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 TNFRSF10CO14798 259 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 ATP8B1O43520 1251 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 KCNJ13O60928 360 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 TCEA3O75764 348 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 SLC34A2O95436 690 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 TNFP01375 233 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 CTSEP14091 401 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 PKMP14618 531 aaKnown RBP9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms