RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 GPR1P46091 355 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 HNMTP50135 292 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 PNLIPRP1P54315 467 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 AP1S2P56377 157 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 KCNC3Q14003 757 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 PFKFB4Q16877 469 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 IMPG1Q17R60 797 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 KIF19Q2TAC6 998 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 FOXR1Q6PIV2 292 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 CUZD1Q86UP6 607 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 ACTRT2Q8TDY3 377 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 AP2M1Q96CW1 435 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 LINC00597Q9H2U6 94 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 EFCAB1Q9HAE3 211 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 CYP4F12Q9HCS2 524 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 POLG2Q9UHN1 485 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 C16orf96A6NNT2 1141 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 TK2O00142 265 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 UBDO15205 165 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 TSPAN6O43657 245 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 MYO1DO94832 1006 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 PRAMEF12O95522 483 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 MT-CO1P00395 513 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 PRLP01236 227 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 ALPIP09923 528 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 ARNTP27540 789 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 GDI1P31150 447 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 CCR2P41597 374 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 CBX2Q14781 532 aaPredicted RBP8.31□□□□□ -1.08
USP54-203ENST00000418501 HERC3Q15034 1050 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 CHRNA6Q15825 494 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 ARL13AQ5H913 290 aaPredicted RBP8.31□□□□□ -1.08
USP54-203ENST00000418501 WASHC2DQ5SRD0 308 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 CRTC1Q6UUV9 634 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 NEK10Q6ZWH5 1172 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 SPATA19Q7Z5L4 167 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 TEX9Q8N6V9 391 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 TERB1Q8NA31 727 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 OR52K2Q8NGK3 314 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 RP9Q8TA86 221 aaKnown RBP8.31□□□□□ -1.08
USP54-203ENST00000418501 ITFG1Q8TB96 612 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 GDPD5Q8WTR4 605 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 REPS1Q96D71 796 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 PHF21BQ96EK2 531 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 UBXN10Q96LJ8 280 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 HGH1Q9BTY7 390 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 MID1IP1Q9NPA3 183 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 TRAF6Q9Y4K3 522 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 TSPAN11A1L157 253 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 HMX2A2RU54 273 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 OR51F1A6NGY5 319 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 A8MT66 165 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 K7ERQ8 282 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 AZIN1O14977 448 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 SMAD6O43541 496 aaKnown RBP8.31□□□□□ -1.08
USP54-203ENST00000418501 LEFTY1O75610 366 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 PGM1P36871 562 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 SPINT3P49223 89 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 CCNG1P51959 295 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 DGKKQ5KSL6 1271 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 ZNF776Q68DI1 518 aaPredicted RBP8.31□□□□□ -1.08
USP54-203ENST00000418501 TBC1D19Q8N5T2 526 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 PIP4K2CQ8TBX8 421 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 PBX4Q9BYU1 374 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 EBF3Q9H4W6 596 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 IGSF5Q9NSI5 407 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 GID8Q9NWU2 228 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 MARCH4Q9P2E8 410 aaPredicted RBP8.31□□□□□ -1.08
USP54-203ENST00000418501 FBXO10Q9UK96 956 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 CCL26Q9Y258 94 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 B2RBV5 119 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 G3V2L1 256 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 DNTTP04053 509 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 EPHX1P07099 455 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 ACADMP11310 421 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 ATP1B2P14415 290 aaPredicted RBP8.31□□□□□ -1.08
USP54-203ENST00000418501 STK19P49842 368 aaPredicted RBP8.31□□□□□ -1.08
USP54-203ENST00000418501 GRSF1Q12849 480 aaKnown RBP eCLIP8.31□□□□□ -1.08
USP54-203ENST00000418501 CYLC2Q14093 348 aaPredicted RBP8.31□□□□□ -1.08
USP54-203ENST00000418501 HSF5Q4G112 596 aaPredicted RBP8.31□□□□□ -1.08
USP54-203ENST00000418501 PRMT9Q6P2P2 845 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 PAQR3Q6TCH7 311 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 GPRIN3Q6ZVF9 776 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 KIAA0907Q7Z7F0 614 aaPredicted RBP8.31□□□□□ -1.08
USP54-203ENST00000418501 CHPFQ8IZ52 775 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 TDHQ8IZJ6 230 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 C12orf76Q8N812 135 aaPredicted RBP8.31□□□□□ -1.08
USP54-203ENST00000418501 RFWD2Q8NHY2 731 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 ECHDC3Q96DC8 303 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 APOL5Q9BWW9 433 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 COG4Q9H9E3 785 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 TMEM45AQ9NWC5 275 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 SMOXQ9NWM0 555 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 BAIAP2L1Q9UHR4 511 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 ANGPTL2Q9UKU9 493 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 EIF3LQ9Y262 564 aaKnown RBP8.31□□□□□ -1.08
USP54-203ENST00000418501 AP3M1Q9Y2T2 418 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 FIS1Q9Y3D6 152 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 GRXCR1A8MXD5 290 aa8.3□□□□□ -1.08
USP54-203ENST00000418501 LBPP18428 481 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms