RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 PIGNO95427 931 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 NFATC1O95644 943 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 NDST3O95803 873 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 MAPK8P45983 427 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 IRF9Q00978 393 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 NSUN2Q08J23 767 aaKnown RBP eCLIP12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 SLC10A7Q0GE19 358 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 RUNX3Q13761 415 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 KPNB1Q14974 876 aaKnown RBP12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 HERC3Q15034 1050 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 MAPRE2Q15555 327 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 TMEM196Q5HYL7 178 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 ARTNQ5T4W7 220 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 ALG1LQ6GMV1 187 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 ZNF783Q6ZMS7 281 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 TPGS1Q6ZTW0 290 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 CHST9Q7L1S5 443 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 CYP2U1Q7Z449 544 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 RAB44Q7Z6P3 723 aaPredicted RBP12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 HOMEZQ8IX15 550 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 LGI2Q8N0V4 545 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 CPSF7Q8N684 471 aaKnown RBP12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 ZNF781Q8N8C0 355 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 OR6P1Q8NGX9 317 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 PIGKQ92643 395 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 ZNF778Q96MU6 729 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 TCF12Q99081 682 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 SLC32A1Q9H598 525 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 HPS4Q9NQG7 708 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 SPHK2Q9NRA0 654 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 STOML2Q9UJZ1 356 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 PRPF19Q9UMS4 504 aaKnown RBP12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 VWA7Q9Y334 891 aa12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 KIF26AQ9ULI4 1882 aaPredicted RBP12.84□□□□□ -0.35
SMARCB1-203ENST00000407082 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 ILVBLA1L0T0 632 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 OTOL1A6NHN0 477 aaPredicted RBP12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 EIF4E1BA6NMX2 242 aaKnown RBP12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 TARM1B6A8C7 271 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 GOLGA8TH3BQL2 631 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 CDX4O14627 284 aaPredicted RBP12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 PHGDHO43175 533 aaKnown RBP12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 MAP3K7O43318 606 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 SMIM24O75264 130 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 CNTN5O94779 1100 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 APBB3O95704 486 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 COX4I1P13073 169 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 ACADSP16219 412 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 TFEBP19484 476 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 GABRB3P28472 473 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 DHPSP49366 369 aaPredicted RBP12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 NUMBP49757 651 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 GALK1P51570 392 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 NAGLUP54802 743 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 OXCT1P55809 520 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 TAS2R39P59534 338 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 ACTR3P61158 418 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 SIM1P81133 766 aaPredicted RBP12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 MPP1Q00013 466 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 DSC2Q02487 901 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 ACVR1Q04771 509 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 KLF10Q13118 480 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 ZNF177Q13360 481 aaPredicted RBP12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 NAA25Q14CX7 972 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 DHCR24Q15392 516 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 DLG2Q15700 870 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 MUM1Q2TAK8 710 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 ALFQ53S48 1182 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 LY6G5CQ5SRR4 150 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 C1orf146Q5VVC0 180 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 NADSYN1Q6IA69 706 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 TLDC1Q6P9B6 456 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 RFWD3Q6PCD5 774 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 TMEM25Q86YD3 366 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 CILP2Q8IUL8 1156 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 APLFQ8IW19 511 aaPredicted RBP12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 DENND6AQ8IWF6 608 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 FAM217AQ8IXS0 508 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 ULK2Q8IYT8 1036 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 CPXM2Q8N436 756 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 CPA6Q8N4T0 437 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 RPLP0P6Q8NHW5 317 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 ARRDC2Q8TBH0 407 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 ACTRT2Q8TDY3 377 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 IGSF8Q969P0 613 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 NXNL1Q96CM4 212 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 SEMA3CQ99985 751 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 CINPQ9BW66 212 aaPredicted RBP12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 TPSD1Q9BZJ3 242 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 SYTL2Q9HCH5 934 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 FBRSL1Q9HCM7 1045 aaKnown RBP12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 INTS10Q9NVR2 710 aaKnown RBP12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 CPSF2Q9P2I0 782 aaKnown RBP12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 XPR1Q9UBH6 696 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 UBA2Q9UBT2 640 aaPredicted RBP12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 TMCO1Q9UM00 188 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 PLA2G4CQ9UP65 541 aa12.83□□□□□ -0.36
SMARCB1-203ENST00000407082 MSRB2Q9Y3D2 182 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms