RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 CAB39LQ9H9S4 337 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 MOV10Q9HCE1 1003 aaKnown RBP11.07□□□□□ -0.64
CUX1-204ENST00000393824 SCUBE2Q9NQ36 999 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 ACSS2Q9NR19 701 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 THG1LQ9NWX6 298 aaKnown RBP11.07□□□□□ -0.64
CUX1-204ENST00000393824 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.07□□□□□ -0.641e-6■■■■□ 23.3
CUX1-204ENST00000393824 MTRRQ9UBK8 725 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 OAZ3Q9UMX2 235 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 USP3Q9Y6I4 520 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 HIDE1A8MVS5 230 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 TNFRSF10BO14763 440 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 MRASO14807 208 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 NPHS1O60500 1241 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 ABCB7O75027 752 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 SRP72O76094 671 aaKnown RBP11.07□□□□□ -0.64
CUX1-204ENST00000393824 SEC24AO95486 1093 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 NAT2P11245 290 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 NCAM1P13591 858 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 EEF1DP29692 281 aaKnown RBP11.07□□□□□ -0.64
CUX1-204ENST00000393824 ARL4AP40617 200 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 SLC7A2P52569 658 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 MAPK10P53779 464 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 IFITM2Q01629 132 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 E2F2Q14209 437 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 SLC8B1Q6J4K2 584 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 PLEKHG7Q6ZR37 379 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 NEK10Q6ZWH5 1172 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 VASH1Q7L8A9 365 aaPredicted RBP11.07□□□□□ -0.64
CUX1-204ENST00000393824 SLC26A9Q7LBE3 791 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 STRADAQ7RTN6 431 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 SPATA2LQ8IUW3 424 aaPredicted RBP11.07□□□□□ -0.64
CUX1-204ENST00000393824 SCN4BQ8IWT1 228 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 LEMD2Q8NC56 503 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 ROPN1LQ96C74 230 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 ATXN7L3BQ96GX2 97 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 MYRFLQ96LU7 910 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 KCTD15Q96SI1 283 aaPredicted RBP11.07□□□□□ -0.64
CUX1-204ENST00000393824 SLC9A7Q96T83 725 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 MAGEB5Q9BZ81 275 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 LHPPQ9H008 270 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 TASP1Q9H6P5 420 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 LRRC4Q9HBW1 653 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 NSMCE4AQ9NXX6 385 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 AURKCQ9UQB9 309 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 FAM149AA5PLN7 773 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 EI24O14681 340 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 BCAS1O75363 584 aaPredicted RBP11.06□□□□□ -0.64
CUX1-204ENST00000393824 GMNNO75496 209 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 FCGR1AP12314 374 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 ATF6P18850 670 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 PSMA4P25789 261 aaKnown RBP11.06□□□□□ -0.64
CUX1-204ENST00000393824 GSTM2P28161 218 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 GRIK1P39086 918 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 RPS9P46781 194 aaKnown RBP11.06□□□□□ -0.64
CUX1-204ENST00000393824 YAP1P46937 504 aaKnown RBP11.06□□□□□ -0.64
CUX1-204ENST00000393824 POLD2P49005 469 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 TPTEP56180 551 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 GPR17Q13304 367 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 MAPRE1Q15691 268 aaKnown RBP11.06□□□□□ -0.64
CUX1-204ENST00000393824 AGKQ53H12 422 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 RAB41Q5JT25 222 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 SYPL2Q5VXT5 272 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 LCN8Q6JVE9 175 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 KIAA1841Q6NSI8 718 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 CES3Q6UWW8 571 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 ANKS3Q6ZW76 656 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 DDX53Q86TM3 631 aaKnown RBP11.06□□□□□ -0.64
CUX1-204ENST00000393824 TRPV3Q8NET8 790 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 MRM3Q9HC36 420 aaKnown RBP11.06□□□□□ -0.64
CUX1-204ENST00000393824 PIH1D1Q9NWS0 290 aaKnown RBP11.06□□□□□ -0.64
CUX1-204ENST00000393824 CCDC167Q9P0B6 97 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 PLXNA4Q9HCM2 1894 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 TTC24A2A3L6 582 aaPredicted RBP11.06□□□□□ -0.64
CUX1-204ENST00000393824 ERI2A8K979 691 aaKnown RBP11.06□□□□□ -0.64
CUX1-204ENST00000393824 RNF103O00237 685 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 TEX28O15482 410 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 LILRB3O75022 631 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 UGT2B11O75310 529 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 NTRK1P04629 796 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 HDCP19113 662 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 POLR2EP19388 210 aaKnown RBP11.06□□□□□ -0.64
CUX1-204ENST00000393824 IRS1P35568 1242 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 PLA2G16P53816 162 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 RAD23AP54725 363 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 ELAVL2Q12926 359 aaKnown RBP11.06□□□□□ -0.64
CUX1-204ENST00000393824 AQP6Q13520 282 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 SPCS2Q15005 226 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 OTUD1Q5VV17 481 aaPredicted RBP11.06□□□□□ -0.64
CUX1-204ENST00000393824 DDIASQ8IXT1 998 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 P2RY11Q96G91 374 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 HSFY1Q96LI6 401 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 TSNARE1Q96NA8 513 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 AGAP2Q99490 1192 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 SEPT5Q99719 369 aaPredicted RBP11.06□□□□□ -0.64
CUX1-204ENST00000393824 CEP44Q9C0F1 390 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 HOXD1Q9GZZ0 328 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 ATP13A3Q9H7F0 1226 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 OSER1Q9NX31 292 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 BFARQ9NZS9 450 aa11.06□□□□□ -0.64
CUX1-204ENST00000393824 GMIPQ9P107 970 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms