RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CREB5Q02930 508 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 TRAF2Q12933 501 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 STX3Q13277 289 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 POU6F1Q14863 301 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 SETMARQ53H47 684 aaPredicted RBP10.14□□□□□ -0.79
VPS53-202ENST00000389040 DENND5AQ6IQ26 1287 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 CLNKQ7Z7G1 428 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 CMC1Q7Z7K0 106 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 HORMAD1Q86X24 394 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 CRLF3Q8IUI8 442 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 PPP1R14CQ8TAE6 165 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 CEP76Q8TAP6 659 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 PTCD2Q8WV60 388 aaKnown RBP10.14□□□□□ -0.79
VPS53-202ENST00000389040 PIH1D2Q8WWB5 315 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 SKA1Q96BD8 255 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 MRGPRX2Q96LB1 330 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 ZNF778Q96MU6 729 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 LENG8Q96PV6 779 aaPredicted RBP10.14□□□□□ -0.79
VPS53-202ENST00000389040 TRIB3Q96RU7 358 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 CDH19Q9H159 772 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 LRMDAQ9H2I8 198 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 ARNT2Q9HBZ2 717 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 MAGEE1Q9HCI5 957 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 THAP1Q9NVV9 213 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 KCNK4Q9NYG8 393 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 HACD3Q9P035 362 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 HEY2Q9UBP5 337 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.14□□□□□ -0.79
VPS53-202ENST00000389040 CCDC78A2IDD5 438 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 GOLGA8TH3BQL2 631 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 DNAJC6O75061 913 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 PRLP01236 227 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 PROCP04070 461 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 PRKCGP05129 697 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 MPOP05164 745 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 RETP07949 1114 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 F7P08709 466 aaPredicted RBP10.13□□□□□ -0.79
VPS53-202ENST00000389040 MYL2P10916 166 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 METAP1P53582 386 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 WNT3AP56704 352 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 PCLAFQ15004 111 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 SNCBQ16143 134 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 CCDC153Q494R4 210 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 TMEM259Q4ZIN3 620 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 PEAR1Q5VY43 1037 aaPredicted RBP10.13□□□□□ -0.79
VPS53-202ENST00000389040 LYSMD4Q5XG99 296 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 RANBP10Q6VN20 620 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 DPPA4Q7L190 304 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 FAM124AQ86V42 546 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 NLRP8Q86W28 1048 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 CACUL1Q86Y37 369 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 SYT12Q8IV01 421 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 FAM160A2Q8N612 972 aaPredicted RBP10.13□□□□□ -0.79
VPS53-202ENST00000389040 CXorf40AQ8TE69 158 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 VPS39Q96JC1 886 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 C1QTNF2Q9BXJ5 285 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 MRM3Q9HC36 420 aaKnown RBP10.13□□□□□ -0.79
VPS53-202ENST00000389040 PCDH12Q9NPG4 1184 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 SAR1AQ9NR31 198 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 RAD18Q9NS91 495 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 HAO1Q9UJM8 370 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 A0A096LPK6 155 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 A0A1W2PPC4 97 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 MAGEC1O60732 1142 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 PCDH8O95206 1070 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 FGF1P05230 155 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 KRT16P08779 473 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 T-ENOLP0DO92 83 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 FGF3P11487 239 aaPredicted RBP10.13□□□□□ -0.79
VPS53-202ENST00000389040 BCKDHBP21953 392 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 SERPINB3P29508 390 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 MMP12P39900 470 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 HADHAP40939 763 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 ABCG1P45844 678 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 RASSF2P50749 326 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 SGCGQ13326 291 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 LAMB3Q13751 1172 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 POM121L1PQ3SYA9 428 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 KDELC1Q6UW63 502 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 ZCCHC23Q6ZST2 131 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 IQCHQ86VS3 1027 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 CNTN4Q8IWV2 1026 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 CBARPQ8N350 705 aaPredicted RBP10.13□□□□□ -0.79
VPS53-202ENST00000389040 SUMF1Q8NBK3 374 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 DENND6BQ8NEG7 585 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 PDCD6IPQ8WUM4 868 aaKnown RBP10.13□□□□□ -0.79
VPS53-202ENST00000389040 INPP5DQ92835 1189 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 BIRC7Q96CA5 298 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 ERLEC1Q96DZ1 483 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 NSMCE3Q96MG7 304 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 C20orf27Q9GZN8 174 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 ZNF395Q9H8N7 513 aaPredicted RBP10.13□□□□□ -0.79
VPS53-202ENST00000389040 SLC24A3Q9HC58 644 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.13□□□□□ -0.79
VPS53-202ENST00000389040 TMEM216Q9P0N5 145 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 COPG2Q9UBF2 871 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 TCAF1Q9Y4C2 921 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 R4GN57 208 aa10.13□□□□□ -0.79
VPS53-202ENST00000389040 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 CAPN8A6NHC0 703 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms