RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 CALML4Q96GE6 196 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 NT5C1BQ96P26 610 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 TTC1Q99614 292 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 CITED2Q99967 270 aaPredicted RBP-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 NABP2Q9BQ15 211 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 FUCA2Q9BTY2 467 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 TARS2Q9BW92 718 aaKnown RBP-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 PAIP1Q9H074 479 aaKnown RBP-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 ADNPQ9H2P0 1102 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 YY1AP1Q9H869 796 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 C17orf75Q9HAS0 396 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 ZDHHC4Q9NPG8 344 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 ECHDC1Q9NTX5 307 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 MAPRE3Q9UPY8 281 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 DNAJC16Q9Y2G8 782 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 WIF1Q9Y5W5 379 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 MORC2Q9Y6X9 1032 aaPredicted RBP-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 SACSQ9NZJ4 4579 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 MALRD1Q5VYJ5 2156 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 PI4KAP42356 2102 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 ZFHX3Q15911 3703 aa-0.8□□□□□ -2.54
RNU6-540P-201ENST00000384622 COL4A1P02462 1669 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 VPS13BQ7Z7G8 4022 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 CACNA1CQ13936 2221 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 KMT2EQ8IZD2 1858 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 FAM157AC9JC47 383 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 ZZEF1O43149 2961 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 FAM189A1O60320 539 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 GJB3O75712 270 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 PRH1P02810 166 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 PSG2P11465 335 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 ATP1A3P13637 1013 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 LIFP15018 202 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 CSF2RAP15509 400 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 ZNF14P17017 642 aaPredicted RBP-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 GPX3P22352 226 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 AMPHP49418 695 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 MAP2K6P52564 334 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 G3BP1Q13283 466 aaKnown RBP eCLIP-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 PLECQ15149 4684 aaKnown RBP-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 PPP6R3Q5H9R7 873 aaPredicted RBP-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 FIP1L1Q6UN15 594 aaKnown RBP-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 KRT27Q7Z3Y8 459 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 ZSCAN2Q7Z7L9 614 aaPredicted RBP-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 TMEM200AQ86VY9 491 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 WDR5BQ86VZ2 330 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 TMEM139Q8IV31 216 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 KLHDC1Q8N7A1 406 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 OR2L5Q8NG80 312 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 OR56A3Q8NH54 315 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 OLIG1Q8TAK6 271 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 RND1Q92730 232 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 TADA1Q96BN2 335 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 MRGPRX1Q96LB2 322 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 FAM227BQ96M60 508 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 ZNF184Q99676 751 aaPredicted RBP-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 RHNO1Q9BSD3 238 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 IFT27Q9BW83 186 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 TRIM7Q9C029 511 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 CAPN7Q9Y6W3 813 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 CNOT1A5YKK6 2376 aaKnown RBP-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 MYO10Q9HD67 2058 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 LRBAP50851 2863 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 CENPEQ02224 2701 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 POGZQ7Z3K3 1410 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 CSMD3Q7Z407 3707 aa-0.81□□□□□ -2.54
RNU6-540P-201ENST00000384622 PKD1P98161 4303 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 UTP20O75691 2785 aaKnown RBP-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 A0A0A0MQY5 61 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 IGKV1D-43A0A0B4J1Z2 117 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 KLF18A0A0U1RQI7 1052 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 SNAI2O43623 268 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 ZNF861PO60384 105 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 ASMTLO95671 621 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 APBB3O95704 486 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 ACTL6AO96019 429 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 ALDOAP04075 364 aaKnown RBP-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 SUPT20HL2P0C7V6 817 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 HAPLN1P10915 354 aaPredicted RBP-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 IGFBP2P18065 325 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 PRKACGP22612 351 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 HNRNPH1P31943 449 aaKnown RBP-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 CLCN4P51793 760 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 CACNB3P54284 484 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 MOBPQ13875 183 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 P3H1Q32P28 736 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 TMEM35AQ53FP2 167 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 TTI2Q6NXR4 508 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 CDHR3Q6ZTQ4 885 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 SLC16A9Q7RTY1 509 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 ISCA2Q86U28 154 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 HSCBQ8IWL3 235 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 ADSSL1Q8N142 457 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 DCLK2Q8N568 766 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 DEFB119Q8N690 84 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 CCDC71LQ8N9Z2 235 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 NUP37Q8NFH4 326 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 TBC1D16Q8TBP0 767 aa-0.82□□□□□ -2.54
RNU6-540P-201ENST00000384622 ABHD5Q8WTS1 349 aa-0.82□□□□□ -2.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms