RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 CHSY3Q70JA7 882 aa11.51□□□□□ -0.57
SYNE1-204ENST00000367248 EID3Q8N140 333 aa11.51□□□□□ -0.57
SYNE1-204ENST00000367248 DCBLD1Q8N8Z6 715 aa11.51□□□□□ -0.57
SYNE1-204ENST00000367248 TMEM109Q9BVC6 243 aa11.51□□□□□ -0.57
SYNE1-204ENST00000367248 FAM155BO75949 473 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 TMEM63AO94886 807 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 GOT2P00505 430 aaKnown RBP11.5□□□□□ -0.57
SYNE1-204ENST00000367248 CRHR1P34998 444 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 SEPHS1P49903 392 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 SLC10A7Q0GE19 358 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 ADGRD1Q6QNK2 874 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 RNF19BQ6ZMZ0 732 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 Q6ZVU0 165 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 MCCC1Q96RQ3 725 aaPredicted RBP11.5□□□□□ -0.57
SYNE1-204ENST00000367248 AIF1LQ9BQI0 150 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 MECRQ9BV79 373 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 MCOLN1Q9GZU1 580 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 SCML2Q9UQR0 700 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 MTX2O75431 263 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 METTL18O95568 372 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 LINC00032P0C843 101 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 DDX6P26196 483 aaKnown RBP eCLIP11.5□□□□□ -0.57
SYNE1-204ENST00000367248 NUP107P57740 925 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 NAE1Q13564 534 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 MLIPQ5VWP3 458 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 ZMAT2Q96NC0 199 aaKnown RBP11.5□□□□□ -0.57
SYNE1-204ENST00000367248 CDH19Q9H159 772 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 PNPOQ9NVS9 261 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 ANAPC2Q9UJX6 822 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 CNOT3O75175 753 aaKnown RBP11.5□□□□□ -0.57
SYNE1-204ENST00000367248 NMBRP28336 390 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 ECT2LQ008S8 904 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 OR6Y1Q8NGX8 325 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 UQCRBP14927 111 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 CCR3P51677 355 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 MRPS15P82914 257 aaKnown RBP11.5□□□□□ -0.57
SYNE1-204ENST00000367248 IL5RAQ01344 420 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 SLC34A1Q06495 639 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 ZNF563Q8TA94 476 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 APOLD1Q96LR9 279 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 NPY6RQ99463 290 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 NUDT4Q9NZJ9 180 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 DUSP12Q9UNI6 340 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 IGKV6D-21A0A0A0MT36 114 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 STATHP02808 62 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 IQCF3P0C7M6 154 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 NR2F1P10589 423 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 NT5EP21589 574 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 MLLT1Q03111 559 aaPredicted RBP11.5□□□□□ -0.57
SYNE1-204ENST00000367248 HYAL2Q12891 473 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 TAF1AQ15573 450 aaPredicted RBP11.5□□□□□ -0.57
SYNE1-204ENST00000367248 MPP5Q8N3R9 675 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 DLG3Q92796 817 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 ADAMTS10Q9H324 1103 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 HS3ST4Q9Y661 456 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 A8MUA0 341 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 PRMT3O60678 531 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 IDO1P14902 403 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 ITGAXP20702 1163 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 PGDP52209 483 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 KPNB1Q14974 876 aaKnown RBP11.5□□□□□ -0.57
SYNE1-204ENST00000367248 RNF43Q68DV7 783 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 NCBP2-AS2Q69YL0 99 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 TXNRD3NBQ6F5E7 133 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 CASP12Q6UXS9 341 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 FGD2Q7Z6J4 655 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 CLHC1Q8NHS4 586 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 FBXO30Q8TB52 745 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 ZNF232Q9UNY5 417 aa11.5□□□□□ -0.57
SYNE1-204ENST00000367248 PIPSLA2A3N6 862 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 CLOCKO15516 846 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 KRT75O95678 551 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 RPIAP49247 311 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 SOX4Q06945 474 aaPredicted RBP11.49□□□□□ -0.57
SYNE1-204ENST00000367248 MSANTD2Q6P1R3 559 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 PANX1Q96RD7 426 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 ELAC1Q9H777 363 aaKnown RBP11.49□□□□□ -0.57
SYNE1-204ENST00000367248 CHD2O14647 1828 aaKnown RBP11.49□□□□□ -0.57
SYNE1-204ENST00000367248 KLF8O95600 359 aaPredicted RBP11.49□□□□□ -0.57
SYNE1-204ENST00000367248 ADRM1Q16186 407 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 EOGTQ5NDL2 527 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 DNAJB14Q8TBM8 379 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 TSSK3Q96PN8 268 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 VRTNQ9H8Y1 702 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 SGK2Q9HBY8 427 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 GRIN2DO15399 1336 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 LINC00854A0A1B0GVQ3 168 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 TCRBV21S2A2A0A5A6 115 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 RGSL1A5PLK6 1076 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 UNC5CO95185 931 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 RPL4P36578 427 aaKnown RBP11.49□□□□□ -0.57
SYNE1-204ENST00000367248 RPL6Q02878 288 aaKnown RBP11.49□□□□□ -0.57
SYNE1-204ENST00000367248 CREB5Q02930 508 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 LRRC32Q14392 662 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 CYP1B1Q16678 543 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 ZNF544Q6NX49 715 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 LRRC74BQ6ZQY2 392 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 OR2AP1Q8NGE2 309 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 TPSD1Q9BZJ3 242 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 SUV39H2Q9H5I1 410 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms