RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 LDLRP01130 860 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 COL6A1P12109 1028 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 DEFA1P59665 94 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 DEFA3P59666 94 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 RBM39Q14498 530 aaKnown RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 SEMA3AQ14563 771 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 ZC3H14Q6PJT7 736 aaKnown RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 OR2L3Q8NG85 312 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 SUN3Q8TAQ9 357 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 VPS33AQ96AX1 596 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 SIPA1Q96FS4 1042 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 AMBNQ9NP70 447 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 POLMQ9NP87 494 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 FBXL12Q9NXK8 326 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 MFHAS1Q9Y4C4 1052 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 KCNE2Q9Y6J6 123 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 TSPAN9O75954 239 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 FADS2O95864 444 aaKnown RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 CLPTM1O96005 669 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 GNSP15586 552 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 PSMA3P25788 255 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 IL12BP29460 328 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 RRP1BQ14684 758 aaKnown RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 SYPL2Q5VXT5 272 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 ALG1LQ6GMV1 187 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 TNFAIP8L2Q6P589 184 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 KRT73Q86Y46 540 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 TSTD1Q8NFU3 115 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 RLN3Q8WXF3 142 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 KCTD15Q96SI1 283 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 OXCT2Q9BYC2 517 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 FRMD8P1Q9BZ68 369 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 POU2F3Q9UKI9 436 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 RPH3AQ9Y2J0 694 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 ARSHQ5FYA8 562 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 TCEAL5Q5H9L2 206 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 RNASEH2BQ5TBB1 312 aaKnown RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 CAPSLQ8WWF8 208 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 MMABQ96EY8 250 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 FANCEQ9HB96 536 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 CFAP43Q8NDM7 1665 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 FPGTO14772 594 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 PTGER1P34995 402 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 GRM3Q14832 879 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 CLNKQ7Z7G1 428 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 TAC4Q86UU9 113 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 DDHD1Q8NEL9 900 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 OR5T3Q8NGG3 340 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 MYCBPAPQ8TBZ2 947 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 PAAF1Q9BRP4 392 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 OR2AG1Q9H205 316 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 HMGXB4Q9UGU5 601 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 PCDHGA6Q9Y5G7 932 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 NEXMIFQ5QGS0 1516 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 TOR1BO14657 336 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 SLC9A3R1O14745 358 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 CHRNGP07510 517 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 CSTF2P33240 577 aaKnown RBP eCLIP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 JAG1P78504 1218 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 PUS10Q3MIT2 529 aaKnown RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 LMNTD1Q8N9Z9 388 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 THEM6Q8WUY1 208 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 BRI3BPQ8WY22 251 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 MTERF1Q99551 399 aaKnown RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 KLHL4Q9C0H6 718 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 A0A1W2PPK0 400 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 BMP10O95393 424 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 ANXA6P08133 673 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 IDSP22304 550 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 ACLYP53396 1101 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 ZPBP2Q6X784 338 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 ADGRD2Q7Z7M1 963 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 MPP5Q8N3R9 675 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 SLC35C1Q96A29 364 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 MTG2Q9H4K7 406 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 DNAJC11Q9NVH1 559 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 WRAP73Q9P2S5 460 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 PRAMEF1O95521 474 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 SNRPB2P08579 225 aaKnown RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 VPS26BQ4G0F5 336 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 XRRA1Q6P2D8 792 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 SPOCK2Q92563 424 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 RORBQ92753 470 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 MR1Q95460 341 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 FBXO5Q9UKT4 447 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 CLCA3PQ9Y6N3 262 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 SIGLEC16A6NMB1 481 aa7.29□□□□□ -1.24
VPS13A-202ENST00000357409 LAPTM4AQ15012 233 aa7.29□□□□□ -1.24
VPS13A-202ENST00000357409 CHSY3Q70JA7 882 aa7.29□□□□□ -1.24
VPS13A-202ENST00000357409 TMEM86AQ8N2M4 240 aa7.29□□□□□ -1.24
VPS13A-202ENST00000357409 POC5Q8NA72 575 aa7.29□□□□□ -1.24
VPS13A-202ENST00000357409 GALNT11Q8NCW6 608 aa7.29□□□□□ -1.24
VPS13A-202ENST00000357409 RBM18Q96H35 190 aaKnown RBP7.29□□□□□ -1.24
VPS13A-202ENST00000357409 TBC1D23Q9NUY8 699 aa7.29□□□□□ -1.24
VPS13A-202ENST00000357409 GIT1Q9Y2X7 761 aa7.29□□□□□ -1.24
VPS13A-202ENST00000357409 ASTN1O14525 1302 aa7.29□□□□□ -1.24
VPS13A-202ENST00000357409 PLSCR1O15162 318 aa7.29□□□□□ -1.24
VPS13A-202ENST00000357409 CCNE2O96020 404 aa7.29□□□□□ -1.24
VPS13A-202ENST00000357409 MLLT3P42568 568 aaPredicted RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms