RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ARMC3Q5W041 872 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 BSPRYQ5W0U4 402 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 HLA-DQA1Q5Y7H0 255 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 KAZNQ674X7 775 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 TMEM215Q68D42 235 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ZNF280DQ6N043 979 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 KLHDC10Q6PID8 442 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 C1orf228Q6PIY5 440 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CENPUQ71F23 418 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CLNKQ7Z7G1 428 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 LRRC6Q86X45 466 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CCDC105Q8IYK2 499 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ZBED8Q8IZ13 594 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CPSF7Q8N684 471 aaKnown RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 APPL2Q8NEU8 664 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 SPATA22Q8NHS9 363 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 GRK7Q8WTQ7 553 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 DEPDC1BQ8WUY9 529 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 UBLCP1Q8WVY7 318 aaPredicted RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 UROC1Q96N76 676 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 MGME1Q9BQP7 344 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 KATNAL1Q9BW62 490 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 FAM49AQ9H0Q0 323 aaPredicted RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 TUBB1Q9H4B7 451 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 EPB41L1Q9H4G0 881 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 MTG2Q9H4K7 406 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 RABEP2Q9H5N1 569 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 SLC40A1Q9NP59 571 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ALG13Q9NP73 1137 aaKnown RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 SAYSD1Q9NPB0 183 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 XPNPEP3Q9NQH7 507 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ARL8BQ9NVJ2 186 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 GTSE1Q9NYZ3 720 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 TMEM216Q9P0N5 145 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 KLHL14Q9P2G3 628 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 PSMC3IPQ9P2W1 217 aaPredicted RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 MTRRQ9UBK8 725 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 SCOCQ9UIL1 159 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CHMP2BQ9UQN3 213 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 CXorf51AA0A1B0GTR3 108 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 GOLGA6L7A0A1B0GV03 622 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ANTXRLA6NF34 631 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 FAM47DPA6NHR8 397 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 A8MXQ7 604 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 E9PAM4 449 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 HGSO14964 777 aaPredicted RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 ANKRD28O15084 1053 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 GSTA4O15217 222 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 MATN3O15232 486 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 NPHS1O60500 1241 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 SPAG7O75391 227 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 GJB5O95377 273 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 MT-CYBP00156 380 aaPredicted RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 THP07101 528 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ATF2P15336 505 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 KRT4P19013 534 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 BDNFP23560 247 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ADORA2BP29275 332 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 USP8P40818 1118 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ACADSBP45954 432 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 LEPRP48357 1165 aaKnown RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 LHX1P48742 406 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 LIMK2P53671 638 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 PTTG1IPP53801 180 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CDKN2DP55273 166 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 B4GALNT1Q00973 533 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ROR1Q01973 937 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 RNASELQ05823 741 aaKnown RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 DUSP4Q13115 394 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 GPR17Q13304 367 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 SPARCL1Q14515 664 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CYTH1Q15438 398 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 PARP6Q2NL67 630 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 PLEKHN1Q494U1 663 aaPredicted RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 ACCSLQ4AC99 568 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CTSL3PQ5NE16 218 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ADGRF1Q5T601 910 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ZNF648Q5T619 568 aaPredicted RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 LIN9Q5TKA1 542 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 TEPPQ6URK8 271 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 EPGNQ6UW88 154 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 C3orf62Q6ZUJ4 267 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 TMCO2Q7Z6W1 182 aaPredicted RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 USP37Q86T82 979 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ZC3H18Q86VM9 953 aaKnown RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 SPPL2CQ8IUH8 684 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ADGRG2Q8IZP9 1017 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 TTC30BQ8N4P2 665 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 KDM1BQ8NB78 822 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 VN1R2Q8NFZ6 395 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 RAB3IL1Q8TBN0 382 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CAGE1Q8TC20 777 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ZNF398Q8TD17 642 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 STYXQ8WUJ0 223 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 TFB1MQ8WVM0 346 aaKnown RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 WDR60Q8WVS4 1066 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 RSAD2Q8WXG1 361 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 SLCO4A1Q96BD0 722 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 PTERQ96BW5 349 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms