RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ZBTB10Q96DT7 871 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF354BQ96LW1 612 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 UBL7Q96S82 380 aaPredicted RBP8.34□□□□□ -1.07
HMGB1-203ENST00000341423 MYADMQ96S97 322 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 SEMA6CQ9H3T2 930 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 PCDH9Q9HC56 1237 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 KLHL1Q9NR64 748 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 FAIMQ9NVQ4 179 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 ACSL5Q9ULC5 683 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 STK38LQ9Y2H1 464 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 R3HDM2Q9Y2K5 976 aaKnown RBP8.34□□□□□ -1.07
HMGB1-203ENST00000341423 MFHAS1Q9Y4C4 1052 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 F5P12259 2224 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 EXOC1LA0A1B0GW35 172 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 KLHL33A6NCF5 533 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 TRIM64A6NGJ6 449 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 CDC7O00311 574 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 COPEO14579 308 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 TOP3BO95985 862 aaKnown RBP8.34□□□□□ -1.07
HMGB1-203ENST00000341423 CEACAM1P13688 526 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 AIF1P55008 147 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 CFHR1Q03591 330 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 KLHL38Q2WGJ6 581 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 GRAMD1BQ3KR37 738 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 KIAA0930Q6ICG6 404 aaPredicted RBP8.34□□□□□ -1.07
HMGB1-203ENST00000341423 TTLL10Q6ZVT0 673 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 TMC8Q8IU68 726 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 APOL2Q9BQE5 337 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 L1RE1Q9UN81 338 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 A1L4Q6 167 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF726A6NNF4 738 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 E9PAM4 449 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 CPNE3O75131 537 aaKnown RBP8.34□□□□□ -1.07
HMGB1-203ENST00000341423 NDUFA8P51970 172 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 MCL1Q07820 350 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 ART3Q13508 389 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 NLGN4XQ8N0W4 816 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 NLGN4YQ8NFZ3 816 aaPredicted RBP8.34□□□□□ -1.07
HMGB1-203ENST00000341423 GPBAR1Q8TDU6 330 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 NAT9Q9BTE0 207 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 HAUS4Q9H6D7 363 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 CATSPERZQ9NTU4 200 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 MAPRE3Q9UPY8 281 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 SMAPO00193 183 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 SLC7A4O43246 635 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 CDH2P19022 906 aaPredicted RBP8.34□□□□□ -1.07
HMGB1-203ENST00000341423 RPL3P39023 403 aaKnown RBP8.34□□□□□ -1.07
HMGB1-203ENST00000341423 MEA1Q16626 185 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 LACTB2Q53H82 288 aaPredicted RBP8.34□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF805Q5CZA5 627 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF311Q5JNZ3 666 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 RNF168Q8IYW5 571 aaPredicted RBP8.34□□□□□ -1.07
HMGB1-203ENST00000341423 OR1N1Q8NGS0 311 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 CHRDQ9H2X0 955 aa8.34□□□□□ -1.07
HMGB1-203ENST00000341423 KIR2DS5A0A0G2JLQ3 304 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 A0A0G2JNG1 304 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 H0Y3Z8 333 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 KIR2DS3K7RE56 304 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 E2F3O00716 465 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 DTNBO60941 627 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 CPN2P22792 545 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 ZNF41P51814 821 aaPredicted RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 RPS24P62847 133 aaKnown RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 CHRNB3Q05901 458 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 DMPKQ09013 629 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 KIR2DS5Q14953 304 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 MYLK3Q32MK0 819 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 AGAP7PQ5VUJ5 663 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 NEK5Q6P3R8 708 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 GPR65Q8IYL9 337 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 ANKRD42Q8N9B4 389 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 ASB5Q8WWX0 329 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 HIC2Q96JB3 615 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 AGAP4Q96P64 663 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 HNRNPABQ99729 332 aaKnown RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 ADAM33Q9BZ11 813 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 RMND5AQ9H871 391 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 ZNF556Q9HAH1 456 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 RRAGDQ9NQL2 400 aaPredicted RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 EXD2Q9NVH0 621 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 DDX18Q9NVP1 670 aaKnown RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 OPTCQ9UBM4 332 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 PCDHB1Q9Y5F3 818 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 ILVBLA1L0T0 632 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 CCNE2O96020 404 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 CD40LGP29965 261 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 RPS7P62081 194 aaKnown RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 POU5F1Q01860 360 aaKnown RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 STK11Q15831 433 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 KRT71Q3SY84 523 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 TMEM201Q5SNT2 666 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 SYT13Q7L8C5 426 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 TMPRSS12Q86WS5 348 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 GRAMD2AQ8IUY3 354 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 ANKRD7Q92527 254 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 LINGO1Q96FE5 620 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 ZNF578Q96N58 590 aaPredicted RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 SLC2A13Q96QE2 648 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 MRPL45Q9BRJ2 306 aaKnown RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms