RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 DENND6AQ8IWF6 608 aa21.94■■□□□ 1.1
SDC3-202ENST00000339394 OR56A4Q8NGH8 313 aa21.94■■□□□ 1.1
SDC3-202ENST00000339394 CALML6Q8TD86 181 aa21.94■■□□□ 1.1
SDC3-202ENST00000339394 CCDC97Q96F63 343 aaPredicted RBP21.94■■□□□ 1.1
SDC3-202ENST00000339394 WDR92Q96MX6 357 aa21.94■■□□□ 1.1
SDC3-202ENST00000339394 OR2AG1Q9H205 316 aa21.94■■□□□ 1.1
SDC3-202ENST00000339394 CAPN10Q9HC96 672 aa21.94■■□□□ 1.1
SDC3-202ENST00000339394 ZDHHC3Q9NYG2 299 aa21.94■■□□□ 1.1
SDC3-202ENST00000339394 ATXN10Q9UBB4 475 aa21.94■■□□□ 1.1
SDC3-202ENST00000339394 PNMA8BQ9ULN7 279 aaPredicted RBP21.94■■□□□ 1.1
SDC3-202ENST00000339394 SLC17A4Q9Y2C5 497 aa21.94■■□□□ 1.1
SDC3-202ENST00000339394 CTIFO43310 598 aaKnown RBP21.93■■□□□ 1.1
SDC3-202ENST00000339394 SPAG6O75602 509 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 ACSL3O95573 720 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 ASMTLO95671 621 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 FUCA1P04066 466 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 PMLP29590 882 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 AKT1P31749 480 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 TTPAP49638 278 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 PMS2P54278 862 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 B4GALNT1Q00973 533 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 BNC1Q01954 994 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 CTBP1Q13363 440 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 LYPLAL1Q5VWZ2 237 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 KCTD16Q68DU8 428 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 LMNTD2Q8IXW0 634 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 TTC1Q99614 292 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 FAM167BQ9BTA0 163 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 BOCQ9BWV1 1114 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 SMOC1Q9H4F8 434 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 FGF22Q9HCT0 170 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 FSCN3Q9NQT6 498 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 VPS18Q9P253 973 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 GMEB2Q9UKD1 530 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 SLC6A14Q9UN76 642 aa21.93■■□□□ 1.1
SDC3-202ENST00000339394 IGLV3-16A0A075B6K0 115 aa21.92■■□□□ 1.1
SDC3-202ENST00000339394 CDK14O94921 469 aa21.92■■□□□ 1.1
SDC3-202ENST00000339394 MSH3P20585 1137 aa21.92■■□□□ 1.1
SDC3-202ENST00000339394 PPARGP37231 505 aaPredicted RBP21.92■■□□□ 1.1
SDC3-202ENST00000339394 CTSKP43235 329 aa21.92■■□□□ 1.1
SDC3-202ENST00000339394 MGAT5Q09328 741 aa21.92■■□□□ 1.1
SDC3-202ENST00000339394 TYSND1Q2T9J0 566 aa21.92■■□□□ 1.1
SDC3-202ENST00000339394 TEDDM1Q5T9Z0 273 aa21.92■■□□□ 1.1
SDC3-202ENST00000339394 TRMT10CQ7L0Y3 403 aaKnown RBP21.92■■□□□ 1.1
SDC3-202ENST00000339394 PARGQ86W56 976 aa21.92■■□□□ 1.1
SDC3-202ENST00000339394 CNTN4Q8IWV2 1026 aa21.92■■□□□ 1.1
SDC3-202ENST00000339394 MYRIPQ8NFW9 859 aa21.92■■□□□ 1.1
SDC3-202ENST00000339394 AENQ8WTP8 325 aaKnown RBP21.92■■□□□ 1.1
SDC3-202ENST00000339394 MRPL40Q9NQ50 206 aaKnown RBP21.92■■□□□ 1.1
SDC3-202ENST00000339394 SNX11Q9Y5W9 270 aa21.92■■□□□ 1.1
SDC3-202ENST00000339394 TNFRSF10CO14798 259 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 VEGFDO43915 354 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 OR1I1O60431 355 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 PIAS1O75925 651 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 C1QAP02745 245 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 ZNF8P17098 575 aaPredicted RBP21.91■■□□□ 1.1
SDC3-202ENST00000339394 OGNP20774 298 aaKnown RBP21.91■■□□□ 1.1
SDC3-202ENST00000339394 SLC1A2P43004 574 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 EIF2B5Q13144 721 aaKnown RBP21.91■■□□□ 1.1
SDC3-202ENST00000339394 ITIH4Q14624 930 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 PRAMEF14Q5SWL7 426 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 EMBQ6PCB8 327 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 MARK2Q7KZI7 788 aaKnown RBP21.91■■□□□ 1.1
SDC3-202ENST00000339394 FBF1Q8TES7 1133 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 NAT14Q8WUY8 206 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 HEXDCQ8WVB3 486 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 OR1E3Q8WZA6 343 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 TSACCQ96A04 125 aaPredicted RBP21.91■■□□□ 1.1
SDC3-202ENST00000339394 DCUN1D1Q96GG9 259 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 TCF12Q99081 682 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 ZFATQ9P243 1243 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 SLC17A6Q9P2U8 582 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 KLQ9UEF7 1012 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 RAPGEFL1Q9UHV5 662 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 TNRC6BQ9UPQ9 1833 aaKnown RBP21.91■■□□□ 1.1
SDC3-202ENST00000339394 PROB1E7EW31 1015 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 NUAK1O60285 661 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 F7P08709 466 aaPredicted RBP21.91■■□□□ 1.1
SDC3-202ENST00000339394 RALBP11234 206 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 STX2P32856 288 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 PHBP35232 272 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 NSG1P42857 185 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 SRP54P61011 504 aaKnown RBP21.91■■□□□ 1.1
SDC3-202ENST00000339394 IRX4P78413 519 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 GRIK2Q13002 908 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 ALG11Q2TAA5 492 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 ZNF542PQ5EBM4 170 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 ZNF449Q6P9G9 518 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 RASGEF1AQ8N9B8 481 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 C2CD4AQ8NCU7 369 aaPredicted RBP21.91■■□□□ 1.1
SDC3-202ENST00000339394 GABPB2Q8TAK5 448 aaPredicted RBP21.91■■□□□ 1.1
SDC3-202ENST00000339394 PDXPQ96GD0 296 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 SCARF2Q96GP6 870 aaPredicted RBP21.91■■□□□ 1.1
SDC3-202ENST00000339394 ZCCHC2Q9C0B9 1178 aaKnown RBP21.91■■□□□ 1.1
SDC3-202ENST00000339394 SMYD2Q9NRG4 433 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 KLF15Q9UIH9 416 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 MOSPD1Q9UJG1 213 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 FBXO5Q9UKT4 447 aa21.91■■□□□ 1.1
SDC3-202ENST00000339394 PCYT1BQ9Y5K3 369 aaPredicted RBP21.91■■□□□ 1.1
SDC3-202ENST00000339394 ZNF106Q9H2Y7 1883 aaKnown RBP21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms