RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 GLMNQ92990 594 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 FAM83CQ9BQN1 747 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 MTMR10Q9NXD2 777 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 MUC6Q6W4X9 2439 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 GUCA1CO95843 209 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 ACTR1BP42025 376 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 CSNK1DP48730 415 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 ACTR1AP61163 376 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 FASTKD3Q14CZ7 662 aaKnown RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 DGKKQ5KSL6 1271 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 CDKL4Q5MAI5 379 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 TMEM240Q5SV17 173 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 CYB5D1Q6P9G0 228 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 LIMS2Q7Z4I7 341 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 RANBP9Q96S59 729 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 TMPRSS4Q9NRS4 437 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 CHCHD3Q9NX63 227 aaKnown RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 ENTPD4Q9Y227 616 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 COLEC10Q9Y6Z7 277 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 SLC22A2O15244 555 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 SERPINA6P08185 405 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 VIPR1P32241 457 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 CSTF3Q12996 717 aaKnown RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 CDC16Q13042 620 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 METTL2BQ6P1Q9 378 aaKnown RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 DOK6Q6PKX4 331 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 ERN2Q76MJ5 926 aaKnown RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 RTN4RL1Q86UN2 441 aaPredicted RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 CUZD1Q86UP6 607 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 DNAJB8Q8NHS0 232 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 POMKQ9H5K3 350 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 SEMA4BQ9NPR2 832 aaPredicted RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 SH3BP4Q9P0V3 963 aa6.81□□□□□ -1.32
SF3B1-201ENST00000335508 PRPF19Q9UMS4 504 aaKnown RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 ASCC3Q8N3C0 2202 aaKnown RBP6.81□□□□□ -1.32
SF3B1-201ENST00000335508 CAPN8A6NHC0 703 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 HEPACAM2A8MVW5 462 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 NTSR1P30989 418 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 KIR3DL1P43629 444 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 PRKCQQ04759 706 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 ZNF805Q5CZA5 627 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 WASHC2DQ5SRD0 308 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 LYSMD3Q7Z3D4 306 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 SNX32Q86XE0 403 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 SYT12Q8IV01 421 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 SCUBE1Q8IWY4 988 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 DIS3LQ8TF46 1054 aaKnown RBP6.8□□□□□ -1.32
SF3B1-201ENST00000335508 PLEKHG4BQ96PX9 1271 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 PRRG3Q9BZD7 231 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 NDEL1Q9GZM8 345 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 TNKS2Q9H2K2 1166 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 CCDC177Q9NQR7 707 aaPredicted RBP6.8□□□□□ -1.32
SF3B1-201ENST00000335508 SELENONQ9NZV5 590 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 SNX5Q9Y5X3 404 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 A0A1W2PPM1 405 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 BBIP1A8MTZ0 92 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 ISM1B1AKI9 464 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 SLC28A1O00337 649 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 MAFKO60675 156 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 MT-CO1P00395 513 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 GOT2P00505 430 aaKnown RBP6.8□□□□□ -1.32
SF3B1-201ENST00000335508 CBSLP0DN79 551 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 SERPINB1P30740 379 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 CBSP35520 551 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 LAPTM5Q13571 262 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 TEAD4Q15561 434 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 ATXN7L2Q5T6C5 722 aaPredicted RBP6.8□□□□□ -1.32
SF3B1-201ENST00000335508 CPNE9Q8IYJ1 553 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 NETO2Q8NC67 525 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 TTLQ8NG68 377 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 IGSF8Q969P0 613 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 KIAA1191Q96A73 305 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 NDNQ99608 321 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 AARSD1Q9BTE6 412 aaKnown RBP6.8□□□□□ -1.32
SF3B1-201ENST00000335508 MFHAS1Q9Y4C4 1052 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 CXorf51AA0A1B0GTR3 108 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 ANKRD65E5RJM6 399 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 RFPL2O75678 378 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 PGLSO95336 258 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 IL4RP24394 825 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 LEPRP48357 1165 aaKnown RBP6.8□□□□□ -1.32
SF3B1-201ENST00000335508 LRRC74AQ0VAA2 488 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 GRIK2Q13002 908 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 NAE1Q13564 534 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 GNA13Q14344 377 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 ZCCHC23Q6ZST2 131 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 LRRTM4Q86VH4 590 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 ST13P4Q8IZP2 240 aaPredicted RBP6.8□□□□□ -1.32
SF3B1-201ENST00000335508 HM13Q8TCT9 377 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 MSANTD3Q96H12 275 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 C19orf43Q9BQ61 176 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 ZBP1Q9H171 429 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 CWH43Q9H720 699 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 FAM72CH0Y354 149 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 AGPSO00116 658 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 SLC31A1O15431 190 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 ACADSP16219 412 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 DRD4P21917 467 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 HPCAL1P37235 193 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 EIF2DP41214 584 aaKnown RBP6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms