RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 TRIM42Q8IWZ5 723 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 TMEM145Q8NBT3 493 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 GPR150Q8NGU9 434 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 CAMK1GQ96NX5 476 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 SMIM14Q96QK8 99 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 MCMBPQ9BTE3 642 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 OSBPL1AQ9BXW6 950 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 GAREM1Q9H706 876 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 ATP13A3Q9H7F0 1226 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 DNAAF2Q9NVR5 837 aaKnown RBP16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 DKK3Q9UBP4 350 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 GRID1Q9ULK0 1009 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 FRYQ5TBA9 3013 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 VILLO15195 856 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 PFDN6O15212 129 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 FZD6O60353 706 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 MMP20O60882 483 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 VAPBO95292 243 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 SYPP08247 313 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 PYGBP11216 843 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 CREB1P16220 341 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 NFKBIAP25963 317 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 CD38P28907 300 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 CHRNA4P43681 627 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 PRAMEP78395 509 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 BCL2L1Q07817 233 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 SHBQ15464 509 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 ARMC12Q5T9G4 340 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 MROH9Q5TGP6 573 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 NEK5Q6P3R8 708 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 CES3Q6UWW8 571 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 KYAT3Q6YP21 454 aaKnown RBP16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 DGLUCYQ7Z3D6 616 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 KDELC2Q7Z4H8 507 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 C4orf33Q8N1A6 199 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 C2CD4AQ8NCU7 369 aaPredicted RBP16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 BCAS4Q8TDM0 211 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 KLF6Q99612 283 aaPredicted RBP16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 TRIM56Q9BRZ2 755 aaKnown RBP16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 WRAP53Q9BUR4 548 aaKnown RBP16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 C1QTNF2Q9BXJ5 285 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 SLC17A9Q9BYT1 436 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 MAGEE1Q9HCI5 957 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 PCDH12Q9NPG4 1184 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 IARS2Q9NSE4 1012 aaKnown RBP16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 VPS9D1Q9Y2B5 631 aa16.34■□□□□ 0.21
PDLIM1-201ENST00000329399 TMEM131Q92545 1883 aa16.33■□□□□ 0.21
PDLIM1-201ENST00000329399 ARID1BQ8NFD5 2236 aaPredicted RBP16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 WDFY3Q8IZQ1 3526 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 A0A0U1RQS6 177 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 TSPAN11A1L157 253 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 POM121BA6NF01 834 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 HTRA2O43464 458 aaPredicted RBP16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 LDB2O43679 373 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 GLRA3O75311 464 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 COL6A2P12110 1019 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 SERPINA4P29622 427 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 MAGEA12P43365 314 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 ATXN3P54252 364 aaPredicted RBP16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 MRNIPQ6NTE8 343 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 PIP4P1Q86T03 277 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 ANKRD42Q8N9B4 389 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 GRAMD1AQ96CP6 724 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 ECHDC3Q96DC8 303 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 BMFQ96LC9 184 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 ZNF641Q96N77 438 aaPredicted RBP16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 TCF12Q99081 682 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 GPR22Q99680 433 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 NLE1Q9NVX2 485 aaPredicted RBP16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 CHKBQ9Y259 395 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 COQ6Q9Y2Z9 468 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 CHD8Q9HCK8 2581 aa16.33■□□□□ 0.2
PDLIM1-201ENST00000329399 MED19A0JLT2 244 aaPredicted RBP16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 HMX2A2RU54 273 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 A8MX80 341 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 TLR4O00206 839 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 SH3BP5O60239 455 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 PRLP01236 227 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 LPOP22079 712 aaPredicted RBP16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 TYK2P29597 1187 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 RPA3P35244 121 aaPredicted RBP16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 LEPRP48357 1165 aaKnown RBP16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 RPS21P63220 83 aaKnown RBP16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 TRAF2Q12933 501 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 MPP2Q14168 576 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 PDK4Q16654 411 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 SETMARQ53H47 684 aaPredicted RBP16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 TPRG1LQ5T0D9 272 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 GCNT7Q6ZNI0 430 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 SDCCAG8Q86SQ7 713 aaPredicted RBP16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 UNC5BQ8IZJ1 945 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 DEFB124Q8NES8 71 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 RAB3IL1Q8TBN0 382 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 TCP10LQ8TDR4 215 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 ZNF778Q96MU6 729 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 ZNF317Q96PQ6 595 aaPredicted RBP16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 FBXO5Q9UKT4 447 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 PLLPQ9Y342 182 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 ANKRD36A6QL64 1941 aa16.32■□□□□ 0.2
PDLIM1-201ENST00000329399 GOLGA8CPA6NN73 597 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms