RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 AP2A2O94973 939 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 MT-ND1P03886 318 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 CHRNB2P17787 502 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 ALDH4A1P30038 563 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 POLR2JP52435 117 aaKnown RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 POLR2LP62875 67 aaKnown RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 RHAGQ02094 409 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 ANKRD22Q5VYY1 191 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 PGBD2Q6P3X8 592 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 SLC51AQ86UW1 340 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 MON1AQ86VX9 555 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 OR52L1Q8NGH7 329 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 FCRL2Q96LA5 508 aaPredicted RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 MNTQ99583 582 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 NLNQ9BYT8 704 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 IRF2BPLQ9H1B7 796 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 IRAK3Q9Y616 596 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 SCN11AQ9UI33 1791 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 COL1A1P02452 1464 aaPredicted RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 TREHO43280 583 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 BUD23O43709 281 aaKnown RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 XYLBO75191 536 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 PRKD1Q15139 912 aaPredicted RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 PPM1JQ5JR12 505 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 PEG10Q86TG7 708 aaKnown RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 FCGR1BQ92637 280 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 GATA5Q9BWX5 397 aaPredicted RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 ZCCHC2Q9C0B9 1178 aaKnown RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 APOBEC3GQ9HC16 384 aaKnown RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 MRPL17Q9NRX2 175 aaKnown RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 NKIRAS2Q9NYR9 191 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 KLRG2A4D1S0 409 aaPredicted RBP11.43□□□□□ -0.58
VPS39-201ENST00000318006 CYP7B1O75881 506 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 YES1P07947 543 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 PTPN5P54829 565 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 SDHAF4Q5VUM1 108 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 ADAMTSL2Q86TH1 951 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 AMIGO3Q86WK7 504 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 ZZZ3Q8IYH5 903 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 SLC4A11Q8NBS3 891 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 C11orf24Q96F05 449 aaPredicted RBP11.43□□□□□ -0.58
VPS39-201ENST00000318006 BBS4Q96RK4 519 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 PSME2Q9UL46 239 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 STXBP5LQ9Y2K9 1186 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 SLC27A5Q9Y2P5 690 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 A0A0G2JLL6 359 aaPredicted RBP11.43□□□□□ -0.58
VPS39-201ENST00000318006 J3QRK9 145 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 PMM2O15305 246 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 RPLP0P05388 317 aaKnown RBP11.43□□□□□ -0.58
VPS39-201ENST00000318006 PGRP06401 933 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 NOGQ13253 232 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 NOL9Q5SY16 702 aaKnown RBP11.43□□□□□ -0.58
VPS39-201ENST00000318006 USP43Q70EL4 1123 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 SLC26A9Q7LBE3 791 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 PRRT2Q7Z6L0 340 aaPredicted RBP11.43□□□□□ -0.58
VPS39-201ENST00000318006 RALGPS2Q86X27 583 aaPredicted RBP11.43□□□□□ -0.58
VPS39-201ENST00000318006 PLD5Q8N7P1 536 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 ZNF557Q8N988 423 aaPredicted RBP11.43□□□□□ -0.58
VPS39-201ENST00000318006 FBXL8Q96CD0 374 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 TEFMQ96QE5 360 aaKnown RBP11.43□□□□□ -0.58
VPS39-201ENST00000318006 EBF4Q9BQW3 602 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 FEM1AQ9BSK4 669 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 POLR3HQ9Y535 204 aaPredicted RBP11.43□□□□□ -0.58
VPS39-201ENST00000318006 ELOVL7A1L3X0 281 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 OR6C75A6NL08 312 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 CYP2A6P11509 494 aaPredicted RBP11.43□□□□□ -0.58
VPS39-201ENST00000318006 HPGDP15428 266 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 HDCP19113 662 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 LIMK2P53671 638 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 SH3D19Q5HYK7 790 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 DRICH1Q6PGQ1 229 aaPredicted RBP11.43□□□□□ -0.58
VPS39-201ENST00000318006 TPGS1Q6ZTW0 290 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 CENPSQ8N2Z9 138 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 TP53INP1Q96A56 240 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 SPATA5L1Q9BVQ7 753 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 MAGEE1Q9HCI5 957 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 FAM172BPA6NC97 362 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 EFCAB9A8MZ26 197 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 H0Y858 1186 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 SH3BGRLO75368 114 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 RPL3P39023 403 aaKnown RBP11.43□□□□□ -0.58
VPS39-201ENST00000318006 ASTE1Q2TB18 679 aaPredicted RBP11.43□□□□□ -0.58
VPS39-201ENST00000318006 USP41Q3LFD5 358 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 RBM20Q5T481 1227 aaKnown RBP11.43□□□□□ -0.58
VPS39-201ENST00000318006 NETO2Q8NC67 525 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 TFAP2BQ92481 460 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 C1orf21Q9H246 121 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 TMEM9Q9P0T7 183 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 IGSF9Q9P2J2 1179 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 VPS4AQ9UN37 437 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 DUOX1Q9NRD9 1551 aa11.43□□□□□ -0.58
VPS39-201ENST00000318006 TLR5O60602 858 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 PGLSO95336 258 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 FAUP35544 74 aaKnown RBP11.42□□□□□ -0.58
VPS39-201ENST00000318006 TTPAP49638 278 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 GALNT3Q14435 633 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 SUZ12Q15022 739 aaKnown RBP11.42□□□□□ -0.58
VPS39-201ENST00000318006 PTPRNQ16849 979 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 SMU1Q2TAY7 513 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 RBM48Q5RL73 367 aaKnown RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms