RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 SYNCRIPO60506 623 aaKnown RBP13.35□□□□□ -0.27
SKA3-202ENST00000314759 EEDO75530 441 aaKnown RBP13.35□□□□□ -0.27
SKA3-202ENST00000314759 ALBP02768 609 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 PRR35P0CG20 571 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 HAPLN1P10915 354 aaPredicted RBP13.35□□□□□ -0.27
SKA3-202ENST00000314759 JAK1P23458 1154 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 PRDX3P30048 256 aaKnown RBP13.35□□□□□ -0.27
SKA3-202ENST00000314759 SHMT2P34897 504 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 BCL2A1Q16548 175 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 XAF1Q6GPH4 301 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 FAM171BQ6P995 826 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 SLC2A7Q6PXP3 512 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 TFAP2DQ7Z6R9 452 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 DPP9Q86TI2 863 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 TMCO5AQ8N6Q1 288 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 PDPRQ8NCN5 879 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 ALPK1Q96QP1 1244 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 BDH2Q9BUT1 245 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 AIG1Q9NVV5 245 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 SPATA7Q9P0W8 599 aa13.35□□□□□ -0.27
SKA3-202ENST00000314759 CNOT3O75175 753 aaKnown RBP13.34□□□□□ -0.27
SKA3-202ENST00000314759 GOT2P00505 430 aaKnown RBP13.34□□□□□ -0.27
SKA3-202ENST00000314759 C1RP00736 705 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 THP07101 528 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 JUNBP17275 347 aaPredicted RBP13.34□□□□□ -0.27
SKA3-202ENST00000314759 GJA5P36382 358 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 SUOXP51687 545 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 EEFSECP57772 596 aaKnown RBP13.34□□□□□ -0.27
SKA3-202ENST00000314759 OR4D2P58180 307 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 AASDHQ4L235 1098 aaPredicted RBP13.34□□□□□ -0.27
SKA3-202ENST00000314759 MARC1Q5VT66 337 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 BEND5Q7L4P6 421 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 CADM3Q8N126 398 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 SCML4Q8N228 414 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 TMEM199Q8N511 208 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 BPIFB1Q8TDL5 484 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 OSCP1Q8WVF1 389 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 HMCESQ96FZ2 354 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 CCDC68Q9H2F9 335 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 ABHD16BQ9H3Z7 469 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 AGO3Q9H9G7 860 aaKnown RBP13.34□□□□□ -0.27
SKA3-202ENST00000314759 ABCC13Q9NSE7 274 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 UXTQ9UBK9 157 aaPredicted RBP13.34□□□□□ -0.27
SKA3-202ENST00000314759 MAGED1Q9Y5V3 778 aaPredicted RBP13.34□□□□□ -0.27
SKA3-202ENST00000314759 CENPFP49454 3210 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 CCDC154A6NI56 674 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 UPK1AO00322 258 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 CD3EAPO15446 510 aaKnown RBP13.34□□□□□ -0.27
SKA3-202ENST00000314759 VPS4BO75351 444 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 GJB3O75712 270 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 GLP2RO95838 553 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 ATXN1LP0C7T5 689 aaKnown RBP13.34□□□□□ -0.27
SKA3-202ENST00000314759 TCF3P15923 654 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 MFSD10Q14728 455 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 CBX2Q14781 532 aaPredicted RBP13.34□□□□□ -0.27
SKA3-202ENST00000314759 SPCS2Q15005 226 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 OXA1LQ15070 435 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 IQSEC1Q6DN90 963 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 SCIMPQ6UWF3 145 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 SPATA19Q7Z5L4 167 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 LRRTM3Q86VH5 581 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 RIMKLAQ8IXN7 391 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 SFRP1Q8N474 314 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 ABHD11Q8NFV4 315 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 LPPQ93052 612 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 TMEM209Q96SK2 561 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 SMOC2Q9H3U7 446 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 TFB2MQ9H5Q4 396 aaKnown RBP13.34□□□□□ -0.27
SKA3-202ENST00000314759 GIN1Q9NXP7 522 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 IKZF3Q9UKT9 509 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 PSME2Q9UL46 239 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 ARL5AQ9Y689 179 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 TTC3P53804 2025 aa13.34□□□□□ -0.27
SKA3-202ENST00000314759 DYTNA2CJ06 578 aa13.33□□□□□ -0.27
SKA3-202ENST00000314759 SLC22A3O75751 556 aa13.33□□□□□ -0.27
SKA3-202ENST00000314759 RSL1D1O76021 490 aaKnown RBP13.33□□□□□ -0.27
SKA3-202ENST00000314759 HTR1EP28566 365 aa13.33□□□□□ -0.27
SKA3-202ENST00000314759 IL12AP29459 219 aa13.33□□□□□ -0.27
SKA3-202ENST00000314759 ARSFP54793 590 aa13.33□□□□□ -0.27
SKA3-202ENST00000314759 MLLT6P55198 1093 aaPredicted RBP13.33□□□□□ -0.27
SKA3-202ENST00000314759 AQP6Q13520 282 aa13.33□□□□□ -0.27
SKA3-202ENST00000314759 TIGD2Q4W5G0 525 aa13.33□□□□□ -0.27
SKA3-202ENST00000314759 PAN2Q504Q3 1202 aaKnown RBP13.33□□□□□ -0.27
SKA3-202ENST00000314759 LEMD2Q8NC56 503 aa13.33□□□□□ -0.27
SKA3-202ENST00000314759 HERC2P3Q9BVR0 1158 aa13.33□□□□□ -0.27
SKA3-202ENST00000314759 VPS51Q9UID3 782 aa13.33□□□□□ -0.27
SKA3-202ENST00000314759 LEF1Q9UJU2 399 aaPredicted RBP13.33□□□□□ -0.27
SKA3-202ENST00000314759 ZNF225Q9UK10 706 aa13.33□□□□□ -0.27
SKA3-202ENST00000314759 SUPT3HB4E1H0 165 aa13.33□□□□□ -0.28
SKA3-202ENST00000314759 AXIN1O15169 862 aa13.33□□□□□ -0.28
SKA3-202ENST00000314759 CRCPO75575 148 aa13.33□□□□□ -0.28
SKA3-202ENST00000314759 DDNO94850 711 aaPredicted RBP13.33□□□□□ -0.28
SKA3-202ENST00000314759 POLR2JP52435 117 aaKnown RBP13.33□□□□□ -0.28
SKA3-202ENST00000314759 IFITM3Q01628 133 aa13.33□□□□□ -0.28
SKA3-202ENST00000314759 PIGFQ07326 219 aa13.33□□□□□ -0.28
SKA3-202ENST00000314759 FXNQ16595 210 aa13.33□□□□□ -0.28
SKA3-202ENST00000314759 PIK3R6Q5UE93 754 aa13.33□□□□□ -0.28
SKA3-202ENST00000314759 GTF2IRD2BQ6EKJ0 949 aa13.33□□□□□ -0.28
SKA3-202ENST00000314759 SCD5Q86SK9 330 aa13.33□□□□□ -0.28
SKA3-202ENST00000314759 GTF2IRD2Q86UP8 949 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms