RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 NFKBIL1Q9UBC1 381 aaPredicted RBP19.29■□□□□ 0.68
LIME1-201ENST00000309546 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.29■□□□□ 0.68
LIME1-201ENST00000309546 PCDHB11Q9Y5F2 797 aa19.29■□□□□ 0.68
LIME1-201ENST00000309546 SDK2Q58EX2 2172 aa19.29■□□□□ 0.68
LIME1-201ENST00000309546 A8MU76 341 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 MTSS1O43312 755 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 F3P13726 295 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 WNT3AP56704 352 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 CCDC181Q5TID7 509 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 PDPK2PQ6A1A2 396 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 TMEM71Q6P5X7 295 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 IYDQ6PHW0 289 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 KDELC1Q6UW63 502 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 FAM129CQ86XR2 697 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 ZNF567Q8N184 647 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 CCDC112Q8NEF3 446 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 IPMKQ8NFU5 416 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 HTR3CQ8WXA8 447 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 JPH3Q8WXH2 748 aaPredicted RBP19.28■□□□□ 0.68
LIME1-201ENST00000309546 TTC9Q92623 222 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 PMEPA1Q969W9 287 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 QKIQ96PU8 341 aaKnown RBP eCLIP19.28■□□□□ 0.68
LIME1-201ENST00000309546 SRPK1Q96SB4 655 aaKnown RBP19.28■□□□□ 0.68
LIME1-201ENST00000309546 HEMGNQ9BXL5 484 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 SARS2Q9NP81 518 aaKnown RBP19.28■□□□□ 0.68
LIME1-201ENST00000309546 PRDM8Q9NQV8 689 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 DNAJC16Q9Y2G8 782 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 ADGRG1Q9Y653 693 aa19.28■□□□□ 0.68
LIME1-201ENST00000309546 MACROD2A1Z1Q3 448 aa19.27■□□□□ 0.68
LIME1-201ENST00000309546 A6NCN8 305 aa19.27■□□□□ 0.68
LIME1-201ENST00000309546 SOWAHDA6NJG2 315 aa19.27■□□□□ 0.68
LIME1-201ENST00000309546 FGF3P11487 239 aaPredicted RBP19.27■□□□□ 0.68
LIME1-201ENST00000309546 CD82P27701 267 aa19.27■□□□□ 0.68
LIME1-201ENST00000309546 CHRNA4P43681 627 aa19.27■□□□□ 0.68
LIME1-201ENST00000309546 SQSTM1Q13501 440 aa19.27■□□□□ 0.68
LIME1-201ENST00000309546 LY6DQ14210 128 aa19.27■□□□□ 0.68
LIME1-201ENST00000309546 SEPT7Q16181 437 aaKnown RBP19.27■□□□□ 0.68
LIME1-201ENST00000309546 LRRTM4Q86VH4 590 aa19.27■□□□□ 0.68
LIME1-201ENST00000309546 ZNF843Q8N446 348 aa19.27■□□□□ 0.68
LIME1-201ENST00000309546 GDAP1Q8TB36 358 aa19.27■□□□□ 0.68
LIME1-201ENST00000309546 NCSTNQ92542 709 aa19.27■□□□□ 0.68
LIME1-201ENST00000309546 ART4Q93070 314 aa19.27■□□□□ 0.68
LIME1-201ENST00000309546 SH3KBP1Q96B97 665 aa19.27■□□□□ 0.68
LIME1-201ENST00000309546 OXNAD1Q96HP4 312 aaPredicted RBP19.27■□□□□ 0.68
LIME1-201ENST00000309546 RSPH14Q9UHP6 348 aa19.27■□□□□ 0.68
LIME1-201ENST00000309546 KIR2DS5A0A0G2JLQ3 304 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 A0A0G2JNG1 304 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 EFCAB7A8K855 629 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 GPR89AB7ZAQ6 455 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 H7C0C1 242 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 KIR2DS3K7RE56 304 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 EFSO43281 561 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 GPR89BP0CG08 455 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 ATP5OP48047 213 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 ZNF75DP51815 510 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 NAP1L1P55209 391 aaKnown RBP19.26■□□□□ 0.67
LIME1-201ENST00000309546 KIR2DS5Q14953 304 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 PPP2R5EQ16537 467 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 SIRPB2Q5JXA9 342 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 BBS12Q6ZW61 710 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 BLOC1S5Q8TDH9 187 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 MRGPRX2Q96LB1 330 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 PLEKHG4BQ96PX9 1271 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 FCRL5Q96RD9 977 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 TAAR9Q96RI9 348 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 VAT1Q99536 393 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 TBC1D10AQ9BXI6 508 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 FSD1LQ9BXM9 530 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 C10orf88Q9H8K7 445 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 OCIAD1Q9NX40 245 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 SLC39A1Q9NY26 324 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 CPNE7Q9UBL6 633 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 KLHL3Q9UH77 587 aa19.26■□□□□ 0.67
LIME1-201ENST00000309546 LOC285095A0A1B0GVY8 99 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 OR5K4A6NMS3 321 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 PDZK1P1A8MUH7 402 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 HACD1B0YJ81 288 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 STMND1H3BQB6 276 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 CHUKO15111 745 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 KMOO15229 486 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 CDK14O94921 469 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 NDUFA10O95299 355 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 IPO7O95373 1038 aaKnown RBP19.25■□□□□ 0.67
LIME1-201ENST00000309546 EPHA4P54764 986 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 GTF2H3Q13889 308 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 KHDC1Q4VXA5 237 aaKnown RBP19.25■□□□□ 0.67
LIME1-201ENST00000309546 GLT6D1Q7Z4J2 308 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 TRIM48Q8IWZ4 208 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 AVL9Q8NBF6 648 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 WBP1Q96G27 269 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 LDHAL6BQ9BYZ2 381 aaPredicted RBP19.25■□□□□ 0.67
LIME1-201ENST00000309546 SEMA4CQ9C0C4 833 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 B3GNT4Q9C0J1 378 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 SLC23A2Q9UGH3 650 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 B3GALT1Q9Y5Z6 326 aa19.25■□□□□ 0.67
LIME1-201ENST00000309546 APOC4-APOC2K7ER74 178 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 BUD23O43709 281 aaKnown RBP19.24■□□□□ 0.67
LIME1-201ENST00000309546 VEGFDO43915 354 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 APOC2P02655 101 aa19.24■□□□□ 0.67
LIME1-201ENST00000309546 ZNF7P17097 686 aaPredicted RBP19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms