RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 CRYBG1Q9Y4K1 1723 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 PAX3P23760 479 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 HID1Q8IV36 788 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 PLD6Q8N2A8 252 aaKnown RBP19.18■□□□□ 0.66
USP48-201ENST00000308271 FBXO27Q8NI29 283 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 ZNF624Q9P2J8 865 aaPredicted RBP19.18■□□□□ 0.66
USP48-201ENST00000308271 SFMBT1Q9UHJ3 866 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 MYH13Q9UKX3 1938 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 PTPRJQ12913 1337 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 A0A0J9YVX5 310 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 TBX1O43435 398 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 TSPAN1O60635 241 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 CES1P23141 567 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 MC4RP32245 332 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 SPIBQ01892 262 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 C11orf96Q7Z7L8 435 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 GPR21Q99679 349 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 KCNK13Q9HB14 408 aa19.18■□□□□ 0.66
USP48-201ENST00000308271 AHSGP02765 367 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 PAICSP22234 425 aaKnown RBP19.17■□□□□ 0.66
USP48-201ENST00000308271 IFNGR2P38484 337 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 COPZ1P61923 177 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 ARHGEF6Q15052 776 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 CXCR6O00574 342 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 MYCP01106 439 aaPredicted RBP19.17■□□□□ 0.66
USP48-201ENST00000308271 ERVK-8P63133 956 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 HNRNPDQ14103 355 aaKnown RBP19.17■□□□□ 0.66
USP48-201ENST00000308271 KLHL35Q6PF15 583 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 PIK3C3Q8NEB9 887 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 PIK3R3Q92569 461 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 MTRRQ9UBK8 725 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 OGDHLQ9ULD0 1010 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 KPNA6O60684 536 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 DAOAP59103 153 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 ARPC4P59998 168 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 ELAVL2Q12926 359 aaKnown RBP19.17■□□□□ 0.66
USP48-201ENST00000308271 DDX53Q86TM3 631 aaKnown RBP19.17■□□□□ 0.66
USP48-201ENST00000308271 BPIFA1Q9NP55 256 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 CAPN14A8MX76 684 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 RSL1D1O76021 490 aaKnown RBP19.17■□□□□ 0.66
USP48-201ENST00000308271 FABP3P05413 133 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 TMBIM6P55061 237 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 PPP4R4Q6NUP7 873 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 SLC45A3Q96JT2 553 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 NSMCE3Q96MG7 304 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 NUDT4Q9NZJ9 180 aa19.17■□□□□ 0.66
USP48-201ENST00000308271 MYH11P35749 1972 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 PRMT5O14744 637 aaPredicted RBP19.16■□□□□ 0.66
USP48-201ENST00000308271 ABCB7O75027 752 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 NDST3O95803 873 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 PRKAR1AP10644 381 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 CTSKP43235 329 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 CAMKK1Q8N5S9 505 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 TTC29Q8NA56 475 aaPredicted RBP19.16■□□□□ 0.66
USP48-201ENST00000308271 TSSK3Q96PN8 268 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 DHRS4Q9BTZ2 278 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 TFB2MQ9H5Q4 396 aaKnown RBP19.16■□□□□ 0.66
USP48-201ENST00000308271 ANGPT4Q9Y264 503 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 TRPV2Q9Y5S1 764 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 TPD52L2O43399 206 aaKnown RBP19.16■□□□□ 0.66
USP48-201ENST00000308271 NOBOXO60393 691 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 C7P10643 843 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 PCSK2P16519 638 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 KIR3DL1P43629 444 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 STARD3Q14849 445 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 GLB1L3Q8NCI6 653 aaPredicted RBP19.16■□□□□ 0.66
USP48-201ENST00000308271 OR4K2Q8NGD2 314 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 OR9I1Q8NGQ6 314 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 KANSL3Q9P2N6 904 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 ING4Q9UNL4 249 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 LRP6O75581 1613 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 C5P01031 1676 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 EFCAB9A8MZ26 197 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 GABRDO14764 452 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 OR4F21O95013 312 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 MTPNP58546 118 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 PTCHD4Q6ZW05 846 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 ZZZ3Q8IYH5 903 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 SLC13A3Q8WWT9 602 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 TUBA1CQ9BQE3 449 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 CRISPLD1Q9H336 500 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 ZNF490Q9ULM2 529 aaPredicted RBP19.16■□□□□ 0.66
USP48-201ENST00000308271 FZD1Q9UP38 647 aa19.16■□□□□ 0.66
USP48-201ENST00000308271 LAMA4Q16363 1823 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 BHMG1C9JSJ3 638 aaPredicted RBP19.15■□□□□ 0.66
USP48-201ENST00000308271 STX11O75558 287 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 NR2F6P10588 404 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 ZNF182P17025 639 aaPredicted RBP19.15■□□□□ 0.66
USP48-201ENST00000308271 HCAR3P49019 387 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 SMIM11AP58511 58 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 HSPA14Q0VDF9 509 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 MON1AQ86VX9 555 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 SIX5Q8N196 739 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 GRPEL2Q8TAA5 225 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 IPCEF1Q8WWN9 437 aaPredicted RBP19.15■□□□□ 0.66
USP48-201ENST00000308271 TMBIM1Q969X1 311 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 TMCO6Q96DC7 493 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 FBXL20Q96IG2 436 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 GOLGA2P5Q9HBQ8 144 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 RGPD2P0DJD1 1756 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms