RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 FADS2P1A8MWK0 482 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 C21orf140B9A014 251 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 MTSS1O43312 755 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 MFSD11O43934 449 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 RASSF9O75901 435 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 NDUFA10O95299 355 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 TCF4P15884 667 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 MX2P20592 715 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 F8A1P23610 371 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 GFERP55789 205 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 SLC25A11Q02978 314 aaKnown RBP14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 ERV3-1Q14264 604 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 PAFAH1B3Q15102 231 aaKnown RBP14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 FILIP1LQ4L180 1135 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 CCDC183Q5T5S1 534 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 PRSS42Q7Z5A4 293 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 APLFQ8IW19 511 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 EFCAB3Q8N7B9 438 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 GALNT6Q8NCL4 622 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 FAM71BQ8TC56 605 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 ZDHHC12Q96GR4 267 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 PLEKHG4BQ96PX9 1271 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 SMIM14Q96QK8 99 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 OR6C1Q96RD1 312 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 SPATA16Q9BXB7 569 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 OR2AG1Q9H205 316 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 TRIM39Q9HCM9 518 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 KLC4Q9NSK0 619 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 POT1Q9NUX5 634 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 PADI1Q9ULC6 663 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 PCYT1BQ9Y5K3 369 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 PIPSLA2A3N6 862 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 ANKRD66B4E2M5 251 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 KMOO15229 486 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 VPS4BO75351 444 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 KATNA1O75449 491 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 CREG1O75629 220 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 KIAA0754O94854 1291 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 SLC25A14O95258 325 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 FGF5P12034 268 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 ZNF8P17098 575 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 CASP14P31944 242 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 DCDC1P59894 354 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 INSCQ1MX18 579 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 PPP1R3BQ86XI6 285 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 MAP7D3Q8IWC1 876 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 GALNT11Q8NCW6 608 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 ARRDC2Q8TBH0 407 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 TGM7Q96PF1 710 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 FCRL4Q96PJ5 515 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 TIMM29Q9BSF4 260 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 TWSG1Q9GZX9 223 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 NAT10Q9H0A0 1025 aaKnown RBP14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 RTN4Q9NQC3 1192 aaKnown RBP14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 OGFRQ9NZT2 677 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 ATXN10Q9UBB4 475 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 NFKBIL1Q9UBC1 381 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 EPHA6Q9UF33 1036 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 LNPEPQ9UIQ6 1025 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 VPS4AQ9UN37 437 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 BZW2Q9Y6E2 419 aaKnown RBP14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 ESPL1Q14674 2120 aa14.56□□□□□ -0.08
CCDC88B-201ENST00000301897 ITPR2Q14571 2701 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 CDC14CA4D256 554 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 MYO1FO00160 1098 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 CHUKO15111 745 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 KRT7P08729 469 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 TYRP1P17643 537 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 VCLP18206 1134 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 IL4RP24394 825 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 CAPZBP47756 277 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 SEPHS1P49903 392 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 MLLT10P55197 1068 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 DNASE1L3Q13609 305 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 QPCTQ16769 361 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 TDRD12Q587J7 1177 aaKnown RBP14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 TXNRD3NBQ6F5E7 133 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 WASH2PQ6VEQ5 465 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 LRRTM4Q86VH4 590 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 BPHLQ86WA6 291 aaPredicted RBP14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 KLHL6Q8WZ60 621 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 ZNF670Q9BS34 389 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 XPO4Q9C0E2 1151 aaKnown RBP14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 RAB33BQ9H082 229 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 ZFYVE1Q9HBF4 777 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 PDE7BQ9NP56 450 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 WASH6PQ9NQA3 447 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 ANAPC7Q9UJX3 599 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 TLK1Q9UKI8 766 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 ADGRG1Q9Y653 693 aa14.55□□□□□ -0.08
CCDC88B-201ENST00000301897 PDZK1P1A8MUH7 402 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 VEGFDO43915 354 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 SPAG6O75602 509 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 HLA-DQB2P05538 268 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 ZNF28P17035 718 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 ZNF7P17097 686 aaPredicted RBP14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 NELFEP18615 380 aaKnown RBP14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 NR1D1P20393 614 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms