RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 CES1P23141 567 aa18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 GKP32189 559 aa18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 TRAP1Q12931 704 aaKnown RBP18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 MTX3Q5HYI7 312 aa18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 IYDQ6PHW0 289 aa18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 SPATA31D4Q6ZUB0 917 aa18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 CAMK1DQ8IU85 385 aa18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 PPWD1Q96BP3 646 aaKnown RBP18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 ROPN1LQ96C74 230 aa18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 PLEKHG4BQ96PX9 1271 aa18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 GPR63Q9BZJ6 419 aa18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 HIPK3Q9H422 1215 aa18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 Q9H521 79 aa18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 NOL11Q9H8H0 719 aaKnown RBP18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 SDR39U1Q9NRG7 319 aaPredicted RBP18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 VPS51Q9UID3 782 aa18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 NDUFAF1Q9Y375 327 aa18.19■□□□□ 0.5
SHKBP1-201ENST00000291842 TCRBV3S1A0A5B6 114 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 TIPRLO75663 272 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 ABLIM3O94929 683 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 CA5AP35218 305 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 CSKP41240 450 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 TXNDC8Q6A555 127 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 FAM151BQ6UXP7 276 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 HACD2Q6Y1H2 254 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 DNAJB7Q7Z6W7 309 aaPredicted RBP18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 TMEM150AQ86TG1 271 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 SATL1Q86VE3 508 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 ARL14EPQ8N8R7 260 aaPredicted RBP18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 CDYL2Q8N8U2 506 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 OR52B6Q8NGF0 335 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 OR2T11Q8NH01 316 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 ZFRQ96KR1 1074 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 MYRFLQ96LU7 910 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 HBEGFQ99075 208 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 GPATCH1Q9BRR8 931 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 FAM192AQ9GZU8 254 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 RETREG1Q9H6L5 497 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 PAPOLBQ9NRJ5 636 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 PLK2Q9NYY3 685 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 A8MX80 341 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 BAIAP3O94812 1187 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 OR4F21O95013 312 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 PIM1P11309 404 aaPredicted RBP18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 ZNF26P17031 533 aaPredicted RBP18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 CASP2P42575 452 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 HABP4Q5JVS0 413 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 SLC15A3Q8IY34 581 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 PAF1Q8N7H5 531 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 ZNF483Q8TF39 744 aaPredicted RBP18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 CANT1Q8WVQ1 401 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 TOP1MTQ969P6 601 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 CIB1Q99828 191 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 CNOT6Q9ULM6 557 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 VPS9D1Q9Y2B5 631 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 PKP3Q9Y446 797 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 GPR45Q9Y5Y3 372 aa18.18■□□□□ 0.5
SHKBP1-201ENST00000291842 BBIP1A8MTZ0 92 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 FXYD1O00168 92 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 SMAD6O43541 496 aaKnown RBP18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 ESRRBO95718 433 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 CYBBP04839 570 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 RPL26P61254 145 aaKnown RBP18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 TGFBIQ15582 683 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 DEFB115Q30KQ5 88 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 HMBOX1Q6NT76 420 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 SPPL2CQ8IUH8 684 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 APCDD1Q8J025 514 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 DNAJB14Q8TBM8 379 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 CENPKQ9BS16 269 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 CMTM6Q9NX76 183 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 IL17CQ9P0M4 197 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 ZNF711Q9Y462 761 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 C7orf72A4D263 438 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 GOLGA8CPA6NN73 597 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 E2F3O00716 465 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 STX16O14662 325 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 PFDN6O15212 129 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 OR6B1O95007 311 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 CAPNS1P04632 268 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 FESP07332 822 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 IDO1P14902 403 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 PSMA3P25788 255 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 SLC7A1P30825 629 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 UFM1P61960 85 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 CDH18Q13634 790 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 IFNEQ86WN2 208 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 RNF168Q8IYW5 571 aaPredicted RBP18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 SLAIN1Q8ND83 568 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 PIP4K2CQ8TBX8 421 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 LRRC58Q96CX6 371 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 SLC29A1Q99808 456 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 BOCQ9BWV1 1114 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 ZNF334Q9HCZ1 680 aaPredicted RBP18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 AURKCQ9UQB9 309 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 SLC30A1Q9Y6M5 507 aa18.17■□□□□ 0.5
SHKBP1-201ENST00000291842 GIPC1O14908 333 aa18.16■□□□□ 0.5
SHKBP1-201ENST00000291842 KLK8O60259 260 aa18.16■□□□□ 0.5
SHKBP1-201ENST00000291842 SMIM18P0DKX4 95 aa18.16■□□□□ 0.5
SHKBP1-201ENST00000291842 ETS2P15036 469 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms