RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 C8orf48Q96LL4 319 aa18.39■□□□□ 0.54
PCDH1-201ENST00000287008 TTYH3Q9C0H2 523 aa18.39■□□□□ 0.54
PCDH1-201ENST00000287008 OSBPL2Q9H1P3 480 aa18.39■□□□□ 0.54
PCDH1-201ENST00000287008 SRRM3A6NNA2 597 aaPredicted RBP18.39■□□□□ 0.53
PCDH1-201ENST00000287008 WNT9AO14904 365 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 UNC5CO95185 931 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 ITGA1P56199 1179 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 CHIT1Q13231 466 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 CDCA2Q69YH5 1023 aaPredicted RBP18.39■□□□□ 0.53
PCDH1-201ENST00000287008 MSANTD2Q6P1R3 559 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 MED27Q6P2C8 311 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 AMZ2Q86W34 360 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 C8orf59Q8N0T1 100 aaPredicted RBP18.39■□□□□ 0.53
PCDH1-201ENST00000287008 RNF186Q9NXI6 227 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 ENPP3O14638 875 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 TNFAIP8O95379 198 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 TPP2P29144 1249 aaPredicted RBP18.39■□□□□ 0.53
PCDH1-201ENST00000287008 CDH5P33151 784 aaPredicted RBP18.39■□□□□ 0.53
PCDH1-201ENST00000287008 CCDC103Q8IW40 242 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 MPP5Q8N3R9 675 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 ANKRD27Q96NW4 1050 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 TWNKQ96RR1 684 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 SIX2Q9NPC8 291 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 STMN3Q9NZ72 180 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 SAMHD1Q9Y3Z3 626 aaKnown RBP18.39■□□□□ 0.53
PCDH1-201ENST00000287008 GRIN2DO15399 1336 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 GON4LQ3T8J9 2241 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 SUV39H1O43463 412 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 PI15O43692 258 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 EDF1O60869 148 aaKnown RBP18.39■□□□□ 0.53
PCDH1-201ENST00000287008 NRIP1P48552 1158 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 ZNF132P52740 706 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 BNC1Q01954 994 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 NEDD8Q15843 81 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 IRGCQ6NXR0 463 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 NEK5Q6P3R8 708 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 SPATA19Q7Z5L4 167 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 CPNE9Q8IYJ1 553 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 UNC5BQ8IZJ1 945 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 OR4A15Q8NGL6 344 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 XAGE5Q8WWM1 108 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 MAT2BQ9NZL9 334 aa18.39■□□□□ 0.53
PCDH1-201ENST00000287008 DLGAP3O95886 979 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 NMBRP28336 390 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 C2orf80Q0P641 193 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 TIMM50Q3ZCQ8 353 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 C7orf43Q8WVR3 580 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 POF1BQ8WVV4 589 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 PRICKLE1Q96MT3 831 aaPredicted RBP18.38■□□□□ 0.53
PCDH1-201ENST00000287008 FCRL5Q96RD9 977 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 TIMM22Q9Y584 194 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 M0R2N6 131 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 SCAMP1O15126 338 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 TRIM24O15164 1050 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 NRP2O60462 931 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 SLC7A2P52569 658 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 MLLT6P55198 1093 aaPredicted RBP18.38■□□□□ 0.53
PCDH1-201ENST00000287008 SH3PXD2AQ5TCZ1 1133 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 ANKRD22Q5VYY1 191 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 KIAA0930Q6ICG6 404 aaPredicted RBP18.38■□□□□ 0.53
PCDH1-201ENST00000287008 DRICH1Q6PGQ1 229 aaPredicted RBP18.38■□□□□ 0.53
PCDH1-201ENST00000287008 APLFQ8IW19 511 aaPredicted RBP18.38■□□□□ 0.53
PCDH1-201ENST00000287008 C19orf18Q8NEA5 215 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 IRF7Q92985 503 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 SRMSQ9H3Y6 488 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 NOL11Q9H8H0 719 aaKnown RBP18.38■□□□□ 0.53
PCDH1-201ENST00000287008 EQTNQ9NQ60 294 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 CIDEBQ9UHD4 219 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 CFIP05156 583 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 NT5EP21589 574 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 MPSTP25325 297 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 UGT2B15P54855 530 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 LCP2Q13094 533 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 GPR33Q49SQ1 333 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 TMEM139Q8IV31 216 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 MMAAQ8IVH4 418 aaKnown RBP18.38■□□□□ 0.53
PCDH1-201ENST00000287008 PCBD2Q9H0N5 130 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 WDR55Q9H6Y2 383 aaPredicted RBP18.38■□□□□ 0.53
PCDH1-201ENST00000287008 PIGVQ9NUD9 493 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 SIGLEC1Q9BZZ2 1709 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 FFAR2O15552 330 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 SOD2P04179 222 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 USP46P62068 366 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 LPIN1Q14693 890 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 ACAP2Q15057 778 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 FBXW8Q8N3Y1 598 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 RBM18Q96H35 190 aaKnown RBP18.38■□□□□ 0.53
PCDH1-201ENST00000287008 C12orf66Q96MD2 445 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 PRRG4Q9BZD6 226 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 TRPS1Q9UHF7 1281 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 INSL5Q9Y5Q6 135 aa18.38■□□□□ 0.53
PCDH1-201ENST00000287008 FAM155BO75949 473 aa18.37■□□□□ 0.53
PCDH1-201ENST00000287008 ANXA4P09525 319 aaPredicted RBP18.37■□□□□ 0.53
PCDH1-201ENST00000287008 IGFALSP35858 605 aa18.37■□□□□ 0.53
PCDH1-201ENST00000287008 PNLIPRP1P54315 467 aa18.37■□□□□ 0.53
PCDH1-201ENST00000287008 CSNK2BP67870 215 aa18.37■□□□□ 0.53
PCDH1-201ENST00000287008 KCTD19Q17RG1 926 aaPredicted RBP18.37■□□□□ 0.53
PCDH1-201ENST00000287008 LRRC73Q5JTD7 316 aa18.37■□□□□ 0.53
PCDH1-201ENST00000287008 GRASPQ7Z6J2 395 aaPredicted RBP18.37■□□□□ 0.53
PCDH1-201ENST00000287008 DCBLD1Q8N8Z6 715 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms