RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 PYROXD2Q8N2H3 581 aa10.28□□□□□ -0.76
UPF3B-201ENST00000276201 CBR4Q8N4T8 237 aa10.28□□□□□ -0.76
UPF3B-201ENST00000276201 TTC9BQ8N6N2 239 aa10.28□□□□□ -0.76
UPF3B-201ENST00000276201 ACDQ96AP0 544 aa10.28□□□□□ -0.76
UPF3B-201ENST00000276201 MAGED4Q96JG8 741 aa10.28□□□□□ -0.76
UPF3B-201ENST00000276201 ZNF641Q96N77 438 aaPredicted RBP10.28□□□□□ -0.76
UPF3B-201ENST00000276201 SLC2A13Q96QE2 648 aa10.28□□□□□ -0.76
UPF3B-201ENST00000276201 BCL7BQ9BQE9 202 aa10.28□□□□□ -0.76
UPF3B-201ENST00000276201 MRPL45Q9BRJ2 306 aaKnown RBP10.28□□□□□ -0.76
UPF3B-201ENST00000276201 B3GNT5Q9BYG0 378 aa10.28□□□□□ -0.76
UPF3B-201ENST00000276201 MAFFQ9ULX9 164 aa10.28□□□□□ -0.76
UPF3B-201ENST00000276201 ZNF232Q9UNY5 417 aa10.28□□□□□ -0.76
UPF3B-201ENST00000276201 MYLKQ15746 1914 aa10.27□□□□□ -0.76
UPF3B-201ENST00000276201 E2F8A0AVK6 867 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 TMEM247A6NEH6 219 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 ZNF839A8K0R7 811 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 EEF2KO00418 725 aaKnown RBP10.27□□□□□ -0.77
UPF3B-201ENST00000276201 KPNA4O00629 521 aaPredicted RBP10.27□□□□□ -0.77
UPF3B-201ENST00000276201 MATN4O95460 622 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 CCNA2P20248 432 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 CDH3P22223 829 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 WARSP23381 471 aaKnown RBP10.27□□□□□ -0.77
UPF3B-201ENST00000276201 SLC26A3P40879 764 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 HALP42357 657 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 SULT1E1P49888 294 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 PRPSAP1Q14558 356 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 TECRLQ5HYJ1 363 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 PKN3Q6P5Z2 889 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 LARP4Q71RC2 724 aaKnown RBP eCLIP10.27□□□□□ -0.77
UPF3B-201ENST00000276201 ACOT1Q86TX2 421 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 PTRH1Q86Y79 214 aaKnown RBP10.27□□□□□ -0.77
UPF3B-201ENST00000276201 ADGRG5Q8IZF4 528 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 GJD3Q8N144 294 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 TTC30BQ8N4P2 665 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 DHRSXQ8N5I4 330 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 DNAAF3Q8N9W5 541 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 ATAD1Q8NBU5 361 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 RAB2BQ8WUD1 216 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 MARK4Q96L34 752 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 UBXN10Q96LJ8 280 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 PKMYT1Q99640 499 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 MAGEB5Q9BZ81 275 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 OSBPL2Q9H1P3 480 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 TMLHEQ9NVH6 421 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 INTS10Q9NVR2 710 aaKnown RBP10.27□□□□□ -0.77
UPF3B-201ENST00000276201 TMEM45AQ9NWC5 275 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 PKD2L2Q9NZM6 624 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 SCHIP1Q9P0W5 487 aaPredicted RBP10.27□□□□□ -0.77
UPF3B-201ENST00000276201 GMIPQ9P107 970 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 KIAA1522Q9P206 1035 aaPredicted RBP10.27□□□□□ -0.77
UPF3B-201ENST00000276201 YIPF1Q9Y548 306 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 NME7Q9Y5B8 376 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 DOCK6Q96HP0 2047 aa10.27□□□□□ -0.77
UPF3B-201ENST00000276201 DLL1O00548 723 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 CLOCKO15516 846 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 AHSGP02765 367 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 RBP1P09455 135 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 GPX3P22352 226 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 PSMA4P25789 261 aaKnown RBP10.26□□□□□ -0.77
UPF3B-201ENST00000276201 NMBRP28336 390 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 BMXP51813 675 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 NTHL1P78549 312 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 DUSP4Q13115 394 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 FXNQ16595 210 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 RGS21Q2M5E4 152 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 MAP7D1Q3KQU3 841 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 TBCELQ5QJ74 424 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 CERCAMQ5T4B2 595 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 NEK10Q6ZWH5 1172 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 TBC1D21Q8IYX1 336 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 C2CD4AQ8NCU7 369 aaPredicted RBP10.26□□□□□ -0.77
UPF3B-201ENST00000276201 CCNYQ8ND76 341 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 KCTD13Q8WZ19 329 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 PPWD1Q96BP3 646 aaKnown RBP10.26□□□□□ -0.77
UPF3B-201ENST00000276201 EFHD2Q96C19 240 aaPredicted RBP10.26□□□□□ -0.77
UPF3B-201ENST00000276201 NXNL1Q96CM4 212 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 L3HYPDHQ96EM0 354 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 ATXN7L3BQ96GX2 97 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 TEKT5Q96M29 485 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 ACBD6Q9BR61 282 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 MROQ9BYG7 248 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 WDR6Q9NNW5 1121 aaKnown RBP10.26□□□□□ -0.77
UPF3B-201ENST00000276201 IGSF5Q9NSI5 407 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 PIH1D1Q9NWS0 290 aaKnown RBP10.26□□□□□ -0.77
UPF3B-201ENST00000276201 HCFC1R1Q9NWW0 138 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 SMPD3Q9NY59 655 aaPredicted RBP10.26□□□□□ -0.77
UPF3B-201ENST00000276201 SEPT10Q9P0V9 454 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 STAP1Q9ULZ2 295 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 SHROOM3Q8TF72 1996 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 FAM95CA0A1B0GW59 222 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 A0A1W2PPW3 197 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 HTR3EA5X5Y0 456 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 C2CD4DB7Z1M9 353 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 PHGDHO43175 533 aaKnown RBP10.26□□□□□ -0.77
UPF3B-201ENST00000276201 ADAM23O75077 832 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 XYLBO75191 536 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 GPC4O75487 556 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 MBL2P11226 248 aaPredicted RBP10.26□□□□□ -0.77
UPF3B-201ENST00000276201 LMO2P25791 158 aa10.26□□□□□ -0.77
UPF3B-201ENST00000276201 LHX1P48742 406 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms