RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 FBXO48Q5FWF7 155 aa16.6■□□□□ 0.25
PHRF1-201ENST00000264555 KIFC1Q9BW19 673 aa16.6■□□□□ 0.25
PHRF1-201ENST00000264555 TMEM245Q9H330 911 aa16.6■□□□□ 0.25
PHRF1-201ENST00000264555 KLHL3Q9UH77 587 aa16.6■□□□□ 0.25
PHRF1-201ENST00000264555 ITM2BQ9Y287 266 aa16.6■□□□□ 0.25
PHRF1-201ENST00000264555 ANKRD36CQ5JPF3 1778 aa16.6■□□□□ 0.25
PHRF1-201ENST00000264555 SLC35G4P0C7Q5 338 aa16.6■□□□□ 0.25
PHRF1-201ENST00000264555 PCSK2P16519 638 aa16.6■□□□□ 0.25
PHRF1-201ENST00000264555 THOP1P52888 689 aa16.6■□□□□ 0.25
PHRF1-201ENST00000264555 UBE3AQ05086 875 aa16.6■□□□□ 0.25
PHRF1-201ENST00000264555 MRPL28Q13084 256 aaKnown RBP16.6■□□□□ 0.25
PHRF1-201ENST00000264555 TRIM40Q6P9F5 258 aa16.6■□□□□ 0.25
PHRF1-201ENST00000264555 GMPPBQ9Y5P6 360 aa16.6■□□□□ 0.25
PHRF1-201ENST00000264555 DNAJA2O60884 412 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 OR4F21O95013 312 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 DLGAP3O95886 979 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 CNPP09543 421 aaKnown RBP16.59■□□□□ 0.25
PHRF1-201ENST00000264555 UPP1Q16831 310 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 RASAL3Q86YV0 1011 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 BPIFB6Q8NFQ5 453 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 APOLD1Q96LR9 279 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 SGK2Q9HBY8 427 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 DEC1Q9P2X7 70 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 ASB3Q9Y575 518 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 HERC3Q15034 1050 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 SMG8Q8ND04 991 aaKnown RBP16.59■□□□□ 0.25
PHRF1-201ENST00000264555 SNRNP27Q8WVK2 155 aaKnown RBP16.59■□□□□ 0.25
PHRF1-201ENST00000264555 REXO5Q96IC2 774 aaKnown RBP16.59■□□□□ 0.25
PHRF1-201ENST00000264555 DGCR6LQ9BY27 220 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 EIF2B4Q9UI10 523 aaKnown RBP16.59■□□□□ 0.25
PHRF1-201ENST00000264555 CCND3P30281 292 aaPredicted RBP16.59■□□□□ 0.25
PHRF1-201ENST00000264555 GSCP56915 257 aaPredicted RBP16.59■□□□□ 0.25
PHRF1-201ENST00000264555 LIPEQ05469 1076 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 ELP6Q0PNE2 266 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 LPIN1Q14693 890 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 C16orf72Q14CZ0 275 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 DGUOKQ16854 277 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 TMEM63BQ5T3F8 832 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 ATXN7L2Q5T6C5 722 aaPredicted RBP16.59■□□□□ 0.25
PHRF1-201ENST00000264555 KIAA2013Q8IYS2 634 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 ACDQ96AP0 544 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 CACNA2D2Q9NY47 1150 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 PLCH1Q4KWH8 1693 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 CACNA1SQ13698 1873 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 DNAJC25-GNG10A0A024R161 153 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 OR51F1A6NGY5 319 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 H3BM21 787 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 CNMDO75829 334 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 CDK14O94921 469 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 IVDP26440 423 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 MAGEA11P43364 429 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 ACTR3P61158 418 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 SOX4Q06945 474 aaPredicted RBP16.59■□□□□ 0.25
PHRF1-201ENST00000264555 ACSBG2Q5FVE4 666 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 CPTPQ5TA50 214 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 BHLHB9Q6PI77 547 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 CLHC1Q8NHS4 586 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 CDKN2AIPNLQ96HQ2 116 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 SCLYQ96I15 445 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 AARSD1Q9BTE6 412 aaKnown RBP16.59■□□□□ 0.25
PHRF1-201ENST00000264555 TDRD1Q9BXT4 1180 aaKnown RBP16.59■□□□□ 0.25
PHRF1-201ENST00000264555 RERGLQ9H628 205 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 RHBDL2Q9NX52 303 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 SAMD4AQ9UPU9 718 aaKnown RBP16.59■□□□□ 0.25
PHRF1-201ENST00000264555 CAPN1P07384 714 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 UMPSP11172 480 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 NSG1P42857 185 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 KIR3DL1P43629 444 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 GPR17Q13304 367 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 CCDC142Q17RM4 750 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 CTU1Q7Z7A3 348 aaKnown RBP16.59■□□□□ 0.25
PHRF1-201ENST00000264555 OFCC1Q8IZS5 231 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 DCBLD1Q8N8Z6 715 aa16.59■□□□□ 0.25
PHRF1-201ENST00000264555 GNEQ9Y223 722 aaKnown RBP16.59■□□□□ 0.25
PHRF1-201ENST00000264555 COPG1Q9Y678 874 aaKnown RBP16.59■□□□□ 0.25
PHRF1-201ENST00000264555 GSNP06396 782 aa16.58■□□□□ 0.25
PHRF1-201ENST00000264555 CDC42P60953 191 aa16.58■□□□□ 0.25
PHRF1-201ENST00000264555 CIB1Q99828 191 aa16.58■□□□□ 0.25
PHRF1-201ENST00000264555 AKAP11Q9UKA4 1901 aa16.58■□□□□ 0.25
PHRF1-201ENST00000264555 PER2O15055 1255 aa16.58■□□□□ 0.24
PHRF1-201ENST00000264555 HOXA11P31270 313 aaPredicted RBP16.58■□□□□ 0.24
PHRF1-201ENST00000264555 MS4A13Q5J8X5 152 aa16.58■□□□□ 0.24
PHRF1-201ENST00000264555 OTOP2Q7RTS6 562 aa16.58■□□□□ 0.24
PHRF1-201ENST00000264555 DNAJB7Q7Z6W7 309 aaPredicted RBP16.58■□□□□ 0.24
PHRF1-201ENST00000264555 CCDC103Q8IW40 242 aa16.58■□□□□ 0.24
PHRF1-201ENST00000264555 SPATA5L1Q9BVQ7 753 aa16.58■□□□□ 0.24
PHRF1-201ENST00000264555 ALG2Q9H553 416 aa16.58■□□□□ 0.24
PHRF1-201ENST00000264555 MRM3Q9HC36 420 aaKnown RBP16.58■□□□□ 0.24
PHRF1-201ENST00000264555 SLC2A6Q9UGQ3 507 aa16.58■□□□□ 0.24
PHRF1-201ENST00000264555 SAMHD1Q9Y3Z3 626 aaKnown RBP16.58■□□□□ 0.24
PHRF1-201ENST00000264555 NEMP2A6NFY4 417 aa16.58■□□□□ 0.24
PHRF1-201ENST00000264555 G3V2T6 193 aa16.58■□□□□ 0.24
PHRF1-201ENST00000264555 FGBP02675 491 aa16.58■□□□□ 0.24
PHRF1-201ENST00000264555 PRNPP04156 253 aa16.58■□□□□ 0.24
PHRF1-201ENST00000264555 IDH2P48735 452 aaKnown RBP16.58■□□□□ 0.24
PHRF1-201ENST00000264555 PPCDCQ96CD2 204 aa16.58■□□□□ 0.24
PHRF1-201ENST00000264555 BTBD9Q96Q07 612 aa16.58■□□□□ 0.24
PHRF1-201ENST00000264555 POLR1BQ9H9Y6 1135 aa16.58■□□□□ 0.24
PHRF1-201ENST00000264555 TMEM248Q9NWD8 314 aa16.58■□□□□ 0.24
PHRF1-201ENST00000264555 TRBC1P01850 177 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms