RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 PITRM1Q5JRX3 1037 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 DGKKQ5KSL6 1271 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 LYPLAL1Q5VWZ2 237 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 CYHR1Q6ZMK1 362 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 SNX20Q7Z614 316 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 SERPINA9Q86WD7 417 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 DDIASQ8IXT1 998 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 CMTM8Q8IZV2 173 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 RBFAQ8N0V3 343 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 GRIN3AQ8TCU5 1115 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 SLC22A17Q8WUG5 538 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 ARMC5Q96C12 935 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 ASB8Q9H765 288 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 SEMA4BQ9NPR2 832 aaPredicted RBP12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 CD274Q9NZQ7 290 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 GNPTGQ9UJJ9 305 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 INTS6Q9UL03 887 aaKnown RBP12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 IRAK3Q9Y616 596 aa12.82□□□□□ -0.36
SPTLC1-201ENST00000262554 NCF1BA6NI72 391 aaPredicted RBP12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 VGLL3A8MV65 326 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 NCF1CA8MVU1 366 aaPredicted RBP12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 NRG2O14511 850 aaPredicted RBP12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 GIPC1O14908 333 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 PIP5K1BO14986 540 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 VPS4BO75351 444 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 ZNF821O75541 412 aaPredicted RBP12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 CLDN7O95471 211 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 MLYCDO95822 493 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 SNRPB2P08579 225 aaKnown RBP12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 NCF1P14598 390 aaPredicted RBP12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 ARSAP15289 507 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 DDX6P26196 483 aaKnown RBP eCLIP12.81□□□□□ -0.365e-6■■□□□ 14.2
SPTLC1-201ENST00000262554 CLNS1AP54105 237 aaKnown RBP12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 NFATC2Q13469 925 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 ZNF423Q2M1K9 1284 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 EML3Q32P44 896 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 EFL1Q7Z2Z2 1120 aaKnown RBP12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 HIPK4Q8NE63 616 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 ZNF483Q8TF39 744 aaPredicted RBP12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 ISG20Q96AZ6 181 aaKnown RBP12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 PDLIM5Q96HC4 596 aaKnown RBP12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 RPL10LQ96L21 214 aaKnown RBP12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 C3orf30Q96M34 536 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 TUBGCP5Q96RT8 1024 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 SLC25A23Q9BV35 468 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 AKTIPQ9H8T0 292 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 HCFC1R1Q9NWW0 138 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 CCDC167Q9P0B6 97 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 PCDH10Q9P2E7 1040 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 SLC25A13Q9UJS0 675 aa12.81□□□□□ -0.36
SPTLC1-201ENST00000262554 GLYATL1P3A0A0U1RQE8 302 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 IQCF5A8MTL0 148 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 GAPDHSO14556 408 aaPredicted RBP12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 GRM6O15303 877 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 SRCP12931 536 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 ME2P23368 584 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 CTSOP43234 321 aaPredicted RBP12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 ACADVLP49748 655 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 THOP1P52888 689 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 FOXA1P55317 472 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 ERVFC1P60507 584 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 CDC16Q13042 620 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 CDKN3Q16667 212 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 MYLK3Q32MK0 819 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 ARHGAP15Q53QZ3 475 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 PLPP4Q5VZY2 271 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 GRAMD4Q6IC98 578 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 FRA10AC1Q70Z53 315 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 DHDDSQ86SQ9 333 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 HMGCLL1Q8TB92 370 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 LMLNQ96KR4 655 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 ZNF184Q99676 751 aaPredicted RBP12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 TMEM121BQ9BXQ6 578 aaPredicted RBP12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 NUSAP1Q9BXS6 441 aaKnown RBP12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 IL26Q9NPH9 171 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 MRPL40Q9NQ50 206 aaKnown RBP12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 BATF3Q9NR55 127 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 WBP1LQ9NX94 342 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 NUDT4Q9NZJ9 180 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 PCTPQ9UKL6 214 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 LZTS1Q9Y250 596 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 CCL26Q9Y258 94 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 HS3ST2Q9Y278 367 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 ANKRD12Q6UB98 2062 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 CSPG5O95196 566 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 CHEK2O96017 543 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 PTPN2P17706 415 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 ACRV1P26436 265 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 HLA-FP30511 346 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 SPAM1P38567 509 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 CCR2P41597 374 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 RGS4P49798 205 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 STK19P49842 368 aaPredicted RBP12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 AGTR2P50052 363 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 PTPN5P54829 565 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 PKNOX1P55347 436 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 PPIGQ13427 754 aaKnown RBP eCLIP12.8□□□□□ -0.363e-8■■■□□ 17.7
SPTLC1-201ENST00000262554 FLOT2Q14254 428 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 RBBP7Q16576 425 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 KIF19Q2TAC6 998 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms