RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ACTL7AQ9Y615 435 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 ASPDHA6ND91 283 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 C2orf81A6NN90 581 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 EI24O14681 340 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 CLOCKO15516 846 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 UMPSP11172 480 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 RFC2P35250 354 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 TAF1AQ15573 450 aaPredicted RBP18.57■□□□□ 0.56
CPSF3-201ENST00000238112 XKR7Q5GH72 579 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 MFSD14CQ5VZR4 134 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 COLGALT2Q8IYK4 626 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 TBC1D21Q8IYX1 336 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 TMEM199Q8N511 208 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 OR56A4Q8NGH8 313 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 GFM2Q969S9 779 aaKnown RBP18.57■□□□□ 0.56
CPSF3-201ENST00000238112 FAM193BQ96PV7 902 aaPredicted RBP18.57■□□□□ 0.56
CPSF3-201ENST00000238112 C1orf50Q9BV19 199 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 C1QTNF3Q9BXJ4 246 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 BRINP2Q9C0B6 783 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 RIC8BQ9NVN3 520 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 CIDEBQ9UHD4 219 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 VPS9D1Q9Y2B5 631 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 SLC27A5Q9Y2P5 690 aa18.57■□□□□ 0.56
CPSF3-201ENST00000238112 ACOX3O15254 700 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 SCNN1BP51168 640 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 EEFSECP57772 596 aaKnown RBP18.56■□□□□ 0.56
CPSF3-201ENST00000238112 ERVK-8P63133 956 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 ZBED5Q49AG3 693 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 TIGD2Q4W5G0 525 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 PDCD4Q53EL6 469 aaKnown RBP18.56■□□□□ 0.56
CPSF3-201ENST00000238112 OR7D4Q8NG98 312 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 SEPT5Q99719 369 aaPredicted RBP18.56■□□□□ 0.56
CPSF3-201ENST00000238112 SPON2Q9BUD6 331 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 MAGEH1Q9H213 219 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 SMPD3Q9NY59 655 aaPredicted RBP18.56■□□□□ 0.56
CPSF3-201ENST00000238112 UBA2Q9UBT2 640 aaPredicted RBP18.56■□□□□ 0.56
CPSF3-201ENST00000238112 TRMT6Q9UJA5 497 aaKnown RBP18.56■□□□□ 0.56
CPSF3-201ENST00000238112 FADS3Q9Y5Q0 445 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 TCRBV5S2A0A599 114 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 TRIM64CA6NLI5 447 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 ENPP3O14638 875 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 PFDN6O15212 129 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 HOXD9P28356 352 aaPredicted RBP18.56■□□□□ 0.56
CPSF3-201ENST00000238112 GNA12Q03113 381 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 CLLU1OSQ5K130 101 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 UGT3A1Q6NUS8 523 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 ABRAXAS1Q6UWZ7 409 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 GPRIN3Q6ZVF9 776 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 DHRSXQ8N5I4 330 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 FBXL20Q96IG2 436 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 ACOX2Q99424 681 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 CCSER2Q9H7U1 834 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 GALNT8Q9NY28 637 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 CD274Q9NZQ7 290 aa18.56■□□□□ 0.56
CPSF3-201ENST00000238112 SYN3O14994 580 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 KLK8O60259 260 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 SNAP91O60641 907 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 ZFP36L2P47974 494 aaKnown RBP18.55■□□□□ 0.56
CPSF3-201ENST00000238112 HUNKP57058 714 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 NUP107P57740 925 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 MTA1Q13330 715 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 KCNA10Q16322 511 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 GPSM1Q86YR5 675 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 KIAA2013Q8IYS2 634 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 FNDC5Q8NAU1 212 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 SIDT2Q8NBJ9 832 aaKnown RBP18.55■□□□□ 0.56
CPSF3-201ENST00000238112 MDGA1Q8NFP4 955 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 ISOC1Q96CN7 298 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 EXOC2Q96KP1 924 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 TMEM74Q96NL1 305 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 PSKH2Q96QS6 385 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 MUC3BQ9H195 1237 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 TRMT13Q9NUP7 481 aaKnown RBP18.55■□□□□ 0.56
CPSF3-201ENST00000238112 ZIM2Q9NZV7 527 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 GALPQ9UBC7 116 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 ZNF225Q9UK10 706 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 DYTNA2CJ06 578 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 MANSC4A6NHS7 340 aaPredicted RBP18.55■□□□□ 0.56
CPSF3-201ENST00000238112 INSIG1O15503 277 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 TLR5O60602 858 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 CLIC3O95833 236 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 EOMESO95936 686 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 C1RP00736 705 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 LDLRP01130 860 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 PKMP14618 531 aaKnown RBP18.55■□□□□ 0.56
CPSF3-201ENST00000238112 CES1P23141 567 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 CAPGP40121 348 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 RPS9P46781 194 aaKnown RBP18.55■□□□□ 0.56
CPSF3-201ENST00000238112 CDKN1CP49918 316 aaPredicted RBP18.55■□□□□ 0.56
CPSF3-201ENST00000238112 KCNQ1P51787 676 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 KPNA1P52294 538 aaPredicted RBP18.55■□□□□ 0.56
CPSF3-201ENST00000238112 NANOGP8Q6NSW7 305 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 OR2T11Q8NH01 316 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 MAGEE2Q8TD90 523 aaPredicted RBP18.55■□□□□ 0.56
CPSF3-201ENST00000238112 ADAMTS16Q8TE57 1224 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 OSCP1Q8WVF1 389 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 RPL10LQ96L21 214 aaKnown RBP18.55■□□□□ 0.56
CPSF3-201ENST00000238112 PHF12Q96QT6 1004 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 SLC30A3Q99726 388 aa18.55■□□□□ 0.56
CPSF3-201ENST00000238112 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms