RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TARBP1Q13395 1621 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 A0A087X0B3 334 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 FAM170AA1A519 330 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 WDR27A2RRH5 827 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 NAP1L6A6NFF2 107 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 SGTAO43765 313 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GMDSO60547 372 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 HLA-DPB1P04440 258 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF7P17097 686 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 S100GP29377 79 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 DNAJA1P31689 397 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 IQCCQ4KMZ1 466 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ELMO1Q92556 727 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 UFD1Q92890 307 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 KIAA1143Q96AT1 154 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ASIC4Q96FT7 647 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 RNF157Q96PX1 679 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ZSCAN32Q9NX65 697 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 COL20A1Q9P218 1284 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 NUFIP1Q9UHK0 495 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 FARP1Q9Y4F1 1045 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 C12orf71A8MTZ7 269 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 DISC1C4P0D8 188 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CLUP10909 449 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 IL2P60568 153 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 PRKCDQ05655 676 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 BAMBIQ13145 260 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GRAPQ13588 217 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GPRIN3Q6ZVF9 776 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 METTL3Q86U44 580 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 NOXA1Q86UR1 476 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 SPATA6LQ8N4H0 392 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ATAD1Q8NBU5 361 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 SLC44A5Q8NCS7 719 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 LNX1Q8TBB1 728 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 TSNAXQ99598 290 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 TM9SF2Q99805 663 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 MGME1Q9BQP7 344 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 RUSC1Q9BVN2 902 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 OAS3Q9Y6K5 1087 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 H3BMQ9 156 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CYP2A7P20853 494 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 DGKAP23743 735 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CCNJQ5T5M9 372 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GRHL2Q6ISB3 625 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 TATDN1Q6P1N9 297 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 FAM198BQ6UWH4 519 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF782Q6ZMW2 699 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 SLC47A2Q86VL8 602 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 UNC93AQ86WB7 457 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 DCP1BQ8IZD4 617 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 VWA5B2Q8N398 1253 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF557Q8N988 423 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 OR13J1Q8NGT2 312 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 OR14K1Q8NGZ2 314 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GRAPLQ8TC17 118 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF606Q8WXB4 792 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 COG8Q96MW5 612 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CCDC106Q9BWC9 280 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 FAM105AQ9NUU6 356 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 PAQR5Q9NXK6 330 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 PPP4R1LQ9P1A2 415 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GABBR1Q9UBS5 961 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ZNRF3Q9ULT6 936 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CNTN6Q9UQ52 1028 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 DGKBQ9Y6T7 804 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 INMT-MINDY4F8WBC2 141 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 UROSP10746 265 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 SLC2A4P14672 509 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 FOXN2P32314 431 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GRSF1Q12849 480 aaKnown RBP eCLIP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 NOMO1Q15155 1222 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 MGAT5BQ3V5L5 792 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 LRRC66Q68CR7 880 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GLYATQ6IB77 296 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 METAP1DQ6UB28 335 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ARSKQ6UWY0 536 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ZC3H7AQ8IWR0 971 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 RNF148Q8N7C7 305 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 C11orf65Q8NCR3 313 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CEP76Q8TAP6 659 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 TTC9Q92623 222 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CDC6Q99741 560 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 SAV1Q9H4B6 383 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 OXSMQ9NWU1 459 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GINS2Q9Y248 185 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 SNX8Q9Y5X2 465 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 PTPRMP28827 1452 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 TYROBPO43914 113 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 SNAPINO95295 136 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 RAB4AP20338 218 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 LSM12Q3MHD2 195 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 PLEKHN1Q494U1 663 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ZCCHC23Q6ZST2 131 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 LRTOMTQ8WZ04 291 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 OR51E2Q9H255 320 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ATP13A3Q9H7F0 1226 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 FAM217BQ9NTX9 383 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CCM2LQ9NUG4 571 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 HOXC10Q9NYD6 342 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms