RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 NKAPQ8N5F7 415 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 OR10H5Q8NGA6 315 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 DCAKDQ8WVC6 231 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 TGM7Q96PF1 710 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 SMG9Q9H0W8 520 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 NECTIN3Q9NQS3 549 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 RSL24D1Q9UHA3 163 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 CACNA1EQ15878 2313 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 PIGBOS1A0A0B4J2F0 54 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 TFECO14948 347 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 SNAPC5O75971 98 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ABCG1P45844 678 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 SUOXP51687 545 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 C1orf61Q13536 156 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 DCTN2Q13561 401 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 MAPK11Q15759 364 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ADAMTSL2Q86TH1 951 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 CEP295NLQ96MC4 621 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 TMPRSS4Q9NRS4 437 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 SEMA3GQ9NS98 782 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 HRASLS2Q9NWW9 162 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 NKIRAS2Q9NYR9 191 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 FNIP2Q9P278 1114 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 GRID1Q9ULK0 1009 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 MGAT4AQ9UM21 535 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 MAN2B2Q9Y2E5 1009 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 SNX24Q9Y343 169 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 RBM7Q9Y580 266 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 PCDHB1Q9Y5F3 818 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 SLX4Q8IY92 1834 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 MYADML2A6NDP7 307 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 PGM3O95394 542 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ITGB1P05556 798 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 PRLRP16471 622 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 PGDP52209 483 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 SLC12A3P55017 1021 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 OVGP1Q12889 678 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ITGB3BPQ13352 177 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 SHROOM1Q2M3G4 852 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 KLHDC7AQ5VTJ3 777 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 TAPT1Q6NXT6 567 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 GALNT18Q6P9A2 607 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 RHBDF2Q6PJF5 856 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 BTN2A1Q7KYR7 527 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 GATAD2AQ86YP4 633 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 PSMG2Q969U7 264 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 CMTM5Q96DZ9 223 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 TSC22D3Q99576 134 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ZSCAN5AQ9BUG6 496 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 TBL1XR1Q9BZK7 514 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 FAM192AQ9GZU8 254 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ACSL5Q9ULC5 683 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 SMG5Q9UPR3 1016 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 R4GN57 208 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 CRYBG1Q9Y4K1 1723 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 E9PAM4 449 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 BTN3A1O00481 513 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 NQO1P15559 274 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 TCEA1P23193 301 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 GLDCP23378 1020 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 MAGEA11P43364 429 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 CCR10P46092 362 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 TOB1P50616 345 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 MRPS25P82663 173 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 DSG1Q02413 1049 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 PLP2Q04941 152 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 INPP5AQ14642 412 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 C2CD6Q53TS8 623 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 XKR6Q5GH73 641 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 Q6ZVU0 165 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 PPIL6Q8IXY8 311 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 C3orf20Q8ND61 904 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 RP9Q8TA86 221 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 C8orf48Q96LL4 319 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ZPBPQ9BS86 351 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 THUMPD3Q9BV44 507 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 IL22Q9GZX6 179 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 SPIN1Q9Y657 262 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ROBO3Q96MS0 1386 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 RNF103O00237 685 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 TNFRSF10BO14763 440 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 CAPN5O15484 640 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 TMCC2O75069 709 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 AGFG2O95081 481 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 STAT5AP42229 794 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 HSPA13P48723 471 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 LAPTM5Q13571 262 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 TERF2Q15554 542 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ZNF423Q2M1K9 1284 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 LSM12Q3MHD2 195 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 KLHL26Q53HC5 615 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 STXBP5Q5T5C0 1151 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 C3orf62Q6ZUJ4 267 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 R3HCC1LQ7Z5L2 792 aaKnown RBP4.99□□□□□ -1.61
SCN1A-218ENST00000640036 ZCCHC10Q8TBK6 192 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 AGR3Q8TD06 166 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 SELENOMQ8WWX9 145 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 TEPSINQ96N21 525 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 FAM111AQ96PZ2 611 aa4.99□□□□□ -1.61
SCN1A-218ENST00000640036 CDADC1Q9BWV3 514 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms