RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ANKRD28O15084 1053 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 NCAM2O15394 837 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 KCNN4O15554 427 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 HOXC11O43248 304 aaPredicted RBP3.86□□□□□ -1.79
CD44-239ENST00000639002 MLYCDO95822 493 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 PRSS56P0CW18 603 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 GNB3P16520 340 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 IL7RP16871 459 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 CHRNB4P30926 498 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 AHRP35869 848 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 UBA7P41226 1012 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 FOXD4Q12950 439 aaPredicted RBP3.86□□□□□ -1.79
CD44-239ENST00000639002 ZNF772Q68DY9 489 aaPredicted RBP3.86□□□□□ -1.79
CD44-239ENST00000639002 LCN10Q6JVE6 187 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 GPR180Q86V85 440 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 DBF4BQ8NFT6 615 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 OR14L1PQ8NHC6 308 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 STAMBPL1Q96FJ0 436 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 SENP5Q96HI0 755 aaPredicted RBP3.86□□□□□ -1.79
CD44-239ENST00000639002 NR1H4Q96RI1 486 aaPredicted RBP3.86□□□□□ -1.79
CD44-239ENST00000639002 SLC25A18Q9H1K4 315 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 SLC52A3Q9NQ40 469 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 MARCH4Q9P2E8 410 aaPredicted RBP3.86□□□□□ -1.79
CD44-239ENST00000639002 KLHL9Q9P2J3 617 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 HAO1Q9UJM8 370 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 NAALADL1Q9UQQ1 740 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 CYP46A1Q9Y6A2 500 aa3.86□□□□□ -1.79
CD44-239ENST00000639002 A0A087X002 238 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 OR5K3A6NET4 321 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 KRTAP16-1A8MUX0 517 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 M0QZ24 198 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 CIDEAO60543 219 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 ABCD3P28288 659 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 HOXC9P31274 260 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 TUBP50607 506 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 PLIN5Q00G26 463 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 CDONQ4KMG0 1287 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 ZC2HC1CQ53FD0 456 aaPredicted RBP3.85□□□□□ -1.79
CD44-239ENST00000639002 PLXDC2Q6UX71 529 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 Q75L30 129 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 PIWIL4Q7Z3Z4 852 aaKnown RBP3.85□□□□□ -1.79
CD44-239ENST00000639002 GTF3C6Q969F1 213 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 ARHGEF26Q96DR7 871 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 ZNF599Q96NL3 588 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 USP44Q9H0E7 712 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 LRMDAQ9H2I8 198 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 VEZTQ9HBM0 779 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 MAP3K20Q9NYL2 800 aaKnown RBP3.85□□□□□ -1.79
CD44-239ENST00000639002 MKLN1Q9UL63 735 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 KDM3AQ9Y4C1 1321 aa3.85□□□□□ -1.79
CD44-239ENST00000639002 HHLA1C9JL84 531 aa3.84□□□□□ -1.79
CD44-239ENST00000639002 TSHBP01222 138 aa3.84□□□□□ -1.79
CD44-239ENST00000639002 KRT5P13647 590 aa3.84□□□□□ -1.79
CD44-239ENST00000639002 ZNF23P17027 643 aa3.84□□□□□ -1.79
CD44-239ENST00000639002 HOXC8P31273 242 aa3.84□□□□□ -1.79
CD44-239ENST00000639002 NEXNQ0ZGT2 675 aa3.84□□□□□ -1.79
CD44-239ENST00000639002 OLIG2Q13516 323 aa3.84□□□□□ -1.79
CD44-239ENST00000639002 PAPD4Q6PIY7 484 aaKnown RBP3.84□□□□□ -1.79
CD44-239ENST00000639002 RBMS3Q6XE24 437 aaKnown RBP3.84□□□□□ -1.79
CD44-239ENST00000639002 ZNF248Q8NDW4 579 aa3.84□□□□□ -1.79
CD44-239ENST00000639002 RRNAD1Q96FB5 475 aaKnown RBP3.84□□□□□ -1.79
CD44-239ENST00000639002 LRR1Q96L50 414 aa3.84□□□□□ -1.79
CD44-239ENST00000639002 SLC28A3Q9HAS3 691 aa3.84□□□□□ -1.79
CD44-239ENST00000639002 SAGE1Q9NXZ1 904 aa3.84□□□□□ -1.79
CD44-239ENST00000639002 RRN3Q9NYV6 651 aa3.84□□□□□ -1.79
CD44-239ENST00000639002 GJD2Q9UKL4 321 aa3.84□□□□□ -1.79
CD44-239ENST00000639002 ACAD8Q9UKU7 415 aa3.84□□□□□ -1.79
CD44-239ENST00000639002 C1orf226A1L170 272 aa3.83□□□□□ -1.8
CD44-239ENST00000639002 TGFB1I1O43294 461 aa3.83□□□□□ -1.8
CD44-239ENST00000639002 CSF2RAP15509 400 aa3.83□□□□□ -1.8
CD44-239ENST00000639002 ZNF182P17025 639 aaPredicted RBP3.83□□□□□ -1.8
CD44-239ENST00000639002 EPHA8P29322 1005 aaPredicted RBP3.83□□□□□ -1.8
CD44-239ENST00000639002 ICAM3P32942 547 aa3.83□□□□□ -1.8
CD44-239ENST00000639002 PAFAH1B1P43034 410 aa3.83□□□□□ -1.8
CD44-239ENST00000639002 DRG2P55039 364 aaKnown RBP3.83□□□□□ -1.8
CD44-239ENST00000639002 MYLK3Q32MK0 819 aa3.83□□□□□ -1.8
CD44-239ENST00000639002 NFKBIDQ8NI38 313 aa3.83□□□□□ -1.8
CD44-239ENST00000639002 ST8SIA4Q92187 359 aa3.83□□□□□ -1.8
CD44-239ENST00000639002 PHF21AQ96BD5 680 aa3.83□□□□□ -1.8
CD44-239ENST00000639002 KRTAP4-4Q9BYR3 166 aa3.83□□□□□ -1.8
CD44-239ENST00000639002 PRKRIP1Q9H875 184 aaPredicted RBP3.83□□□□□ -1.8
CD44-239ENST00000639002 CNOT8Q9UFF9 292 aaKnown RBP3.83□□□□□ -1.8
CD44-239ENST00000639002 IGKV3D-20A0A0C4DH25 116 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 A0A1W2PPI3 338 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 HS3ST1O14792 307 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 CRLF1O75462 422 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 ZNF821O75541 412 aaPredicted RBP3.82□□□□□ -1.8
CD44-239ENST00000639002 KCNK5O95279 499 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 ZNF26P17031 533 aaPredicted RBP3.82□□□□□ -1.8
CD44-239ENST00000639002 UBA1P22314 1058 aaKnown RBP3.82□□□□□ -1.8
CD44-239ENST00000639002 SPOCK1Q08629 439 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 MAD2L1Q13257 205 aaPredicted RBP3.82□□□□□ -1.8
CD44-239ENST00000639002 KIR2DS3Q14952 304 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 LPAL2Q16609 132 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 RAB6CQ53S08 254 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 NSUN5P2Q63ZY6 315 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 KRTAP5-4Q6L8H1 288 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 INO80CQ6PI98 192 aaPredicted RBP3.82□□□□□ -1.8
CD44-239ENST00000639002 PLEKHM3Q6ZWE6 761 aa3.82□□□□□ -1.8
CD44-239ENST00000639002 SPEM1Q8N4L4 309 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms