RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	PPARD	Q03181	441 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	ITIH4	Q14624	930 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	ZNF284	Q2VY69	593 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	TTC31	Q49AM3	519 aa	Predicted RBP	11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	ATP13A5	Q4VNC0	1218 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	HENMT1	Q5T8I9	393 aa	Known RBP	11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	AGBL4	Q5VU57	503 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	TMEM92	Q6UXU6	159 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	KYAT3	Q6YP21	454 aa	Known RBP	11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	USP30	Q70CQ3	517 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	CLEC14A	Q86T13	490 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	UBALD2	Q8IYN6	164 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	MGARP	Q8TDB4	240 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	GANC	Q8TET4	914 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	HEXDC	Q8WVB3	486 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	FAM131C	Q96AQ9	280 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	DTD2	Q96FN9	168 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	SIPA1	Q96FS4	1042 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	TSNARE1	Q96NA8	513 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	NDN	Q99608	321 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	OLFM1	Q99784	485 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	RIOK2	Q9BVS4	552 aa	Known RBP	11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	CLPB	Q9H078	707 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	P2RY12	Q9H244	342 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	LMAN1L	Q9HAT1	526 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	SMOX	Q9NWM0	555 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	FBXL12	Q9NXK8	326 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	TAS2R13	Q9NYV9	303 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	CD84	Q9UIB8	345 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	FBXL21	Q9UKT6	434 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	NCKAP1	Q9Y2A7	1128 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	IGLV3-16	A0A075B6K0	115 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823		A0A1W2PP55	124 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	KANSL1L	A0AUZ9	987 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	KRBA1	A5PL33	1030 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	CHURC1-FNTB	B4DL54	471 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823		H3BMM5	538 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	PHGDH	O43175	533 aa	Known RBP	11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	OR1I1	O60431	355 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	SHOX2	O60902	331 aa	Predicted RBP	11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	ATG13	O75143	517 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	RECQL5	O94762	991 aa	Predicted RBP	11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	RHOBTB1	O94844	696 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	PCDH8	O95206	1070 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	ASMTL	O95671	621 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	PYGL	P06737	847 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	SLC35E2B	P0CK96	405 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	ACADM	P11310	421 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	C6	P13671	934 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	SKIV2L2	P42285	1042 aa	Known RBP	11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	TAS2R38	P59533	333 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	TIAL1	Q01085	375 aa	Known RBP eCLIP	11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	IL9R	Q01113	521 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	DPT	Q07507	201 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	AGER	Q15109	404 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	CCDC153	Q494R4	210 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	UGT3A1	Q6NUS8	523 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	LVRN	Q6Q4G3	990 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	KBTBD6	Q86V97	674 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	DYDC1	Q8WWB3	177 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	ATXN2L	Q8WWM7	1075 aa	Known RBP	11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	SCAMP4	Q969E2	229 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	AP2M1	Q96CW1	435 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	NUS1	Q96E22	293 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	VPS35	Q96QK1	796 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	COPS8	Q99627	209 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	C1QTNF1	Q9BXJ1	281 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	POLM	Q9NP87	494 aa	Predicted RBP	11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	PSD3	Q9NYI0	1048 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	SLC17A7	Q9P2U7	560 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	GNPTG	Q9UJJ9	305 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	TMPRSS11E	Q9UL52	423 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	FZD4	Q9ULV1	537 aa		11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	RUVBL2	Q9Y230	463 aa	Known RBP	11.67	□□□□□ -0.54
CLN6-223	ENST00000637823	NUMA1	Q14980	2115 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	IGLON5	A6NGN9	336 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	SRRM3	A6NNA2	597 aa	Predicted RBP	11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	GPR39	O43194	453 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	PLRG1	O43660	514 aa	Known RBP	11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	RRP9	O43818	475 aa	Known RBP	11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	VPS26A	O75436	327 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	TM7SF2	O76062	418 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	KLHL2	O95198	593 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	WISP3	O95389	354 aa	Predicted RBP	11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	APOA4	P06727	396 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	DHRS4L1	P0CG22	281 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	TARS	P26639	723 aa	Known RBP	11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	CA5A	P35218	305 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	NSG1	P42857	185 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	ETV4	P43268	484 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	KPNA2	P52292	529 aa	Known RBP	11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	DGKE	P52429	567 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	GNGT1	P63211	74 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	RPS21	P63220	83 aa	Known RBP	11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	PDAP1	Q13442	181 aa	Known RBP	11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	LRRC14	Q15048	493 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	CRY1	Q16526	586 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	TSNAXIP1	Q2TAA8	658 aa		11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	SETMAR	Q53H47	684 aa	Predicted RBP	11.66	□□□□□ -0.54
CLN6-223	ENST00000637823	CTSL3P	Q5NE16	218 aa		11.66	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms