RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 TMEM26Q6ZUK4 368 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 STRADAQ7RTN6 431 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 PRSS42Q7Z5A4 293 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 SLFN11Q7Z7L1 901 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 NELFBQ8WX92 580 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 CENPIQ92674 756 aaPredicted RBP14.34□□□□□ -0.11
CLN3-249ENST00000636685 RSC1A1Q92681 617 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 MR1Q95460 341 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 SCAMP4Q969E2 229 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 SMARCE1Q969G3 411 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 NTAN1Q96AB6 310 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 AP2M1Q96CW1 435 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 CCDC34Q96HJ3 373 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 PLEKHG4BQ96PX9 1271 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 CATSPERBQ9H7T0 1116 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 C5AR2Q9P296 337 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 DNAJC12Q9UKB3 198 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 RARRES3Q9UL19 164 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 SEC16AO15027 2179 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 CCDC88CQ9P219 2028 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 C2CD4BA6NLJ0 364 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 PSMD11O00231 422 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 HTRA2O43464 458 aaPredicted RBP14.33□□□□□ -0.12
CLN3-249ENST00000636685 SMC2O95347 1197 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 GNA14O95837 355 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 ATP1A1P05023 1023 aaKnown RBP14.33□□□□□ -0.12
CLN3-249ENST00000636685 CYP2A6P11509 494 aaPredicted RBP14.33□□□□□ -0.12
CLN3-249ENST00000636685 FOLR1P15328 257 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 NELFEP18615 380 aaKnown RBP14.33□□□□□ -0.12
CLN3-249ENST00000636685 PTGER4P35408 488 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 AP1S1P61966 158 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 NSUN2Q08J23 767 aaKnown RBP eCLIP14.33□□□□□ -0.12
CLN3-249ENST00000636685 PAK1Q13153 545 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 KYNUQ16719 465 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 VWA5B1Q5TIE3 1220 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 NAA35Q5VZE5 725 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 SPNS3Q6ZMD2 512 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 GBP6Q6ZN66 633 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 FAM71AQ8IYT1 594 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 ARFGAP1Q8N6T3 406 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 COX14Q96I36 57 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 SLC39A8Q9C0K1 460 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 CHST8Q9H2A9 424 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 UCK1Q9HA47 277 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 SIX2Q9NPC8 291 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 SCHIP1Q9P0W5 487 aaPredicted RBP14.33□□□□□ -0.12
CLN3-249ENST00000636685 CTNND2Q9UQB3 1225 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 PCDHGA10Q9Y5H3 936 aa14.33□□□□□ -0.12
CLN3-249ENST00000636685 OR5K4A6NMS3 321 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 E2F3O00716 465 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 CYP11B1P15538 503 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 PON1P27169 355 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 PTPN9P43378 593 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 VAV2P52735 878 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 KRT85P78386 507 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 PDE1BQ01064 536 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 GPS2Q13227 327 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 ATP1A4Q13733 1029 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 LYPLAL1Q5VWZ2 237 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 HGSNATQ68CP4 663 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 LCN10Q6JVE6 187 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 IRGCQ6NXR0 463 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 ARHGAP36Q6ZRI8 547 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 MED25Q71SY5 747 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 CUZD1Q86UP6 607 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 FJX1Q86VR8 437 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 KCNMB4Q86W47 210 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 ZBTB2Q8N680 514 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 ENDOVQ8N8Q3 282 aaKnown RBP14.32□□□□□ -0.12
CLN3-249ENST00000636685 TMEM102Q8N9M5 508 aaPredicted RBP14.32□□□□□ -0.12
CLN3-249ENST00000636685 SIDT2Q8NBJ9 832 aaKnown RBP14.32□□□□□ -0.12
CLN3-249ENST00000636685 MSANTD4Q8NCY6 345 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 SPOCK2Q92563 424 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 FCRL4Q96PJ5 515 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 AGPAT4Q9NRZ5 378 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 SNX7Q9UNH6 387 aa14.32□□□□□ -0.12
CLN3-249ENST00000636685 IGHV5-51A0A0C4DH38 117 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 ARHGAP42A6NI28 874 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 VIPP01282 170 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 EBLN1P0CF75 366 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 HOXB4P17483 251 aaPredicted RBP14.31□□□□□ -0.12
CLN3-249ENST00000636685 CTPS1P17812 591 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 CA5AP35218 305 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 CAPZBP47756 277 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 BPIFB4P59827 614 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 PPP1CAP62136 330 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 NOMO3P69849 1222 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 ART3Q13508 389 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 LLGL1Q15334 1064 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 EXOC3L4Q17RC7 722 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 ANO6Q4KMQ2 910 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 MIIPQ5JXC2 388 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 IZUMO3Q5VZ72 239 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 CYB5D1Q6P9G0 228 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 CERS6Q6ZMG9 384 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 AVL9Q8NBF6 648 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 SMIM14Q96QK8 99 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 MLPHQ9BV36 600 aaPredicted RBP14.31□□□□□ -0.12
CLN3-249ENST00000636685 SP110Q9HB58 689 aa14.31□□□□□ -0.12
CLN3-249ENST00000636685 WASH6PQ9NQA3 447 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms