RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 SEMA3CQ99985 751 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 CORO1BQ9BR76 489 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 VTA1Q9NP79 307 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 MTMR10Q9NXD2 777 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 MAGEL2Q9UJ55 1249 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 ERGIC3Q9Y282 383 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 ABCB7O75027 752 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 OR4F21O95013 312 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 GSRP00390 522 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 PRKCGP05129 697 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 CAPN3P20807 821 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 MATN1P21941 496 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 EMP3P54852 163 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 DSC2Q02487 901 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 LRP8Q14114 963 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 FAM45BPQ6NSW5 357 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 GPRIN3Q6ZVF9 776 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 FAM45AQ8TCE6 357 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 SPPL2AQ8TCT8 520 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 INTS10Q9NVR2 710 aaKnown RBP10.97□□□□□ -0.65
CLN3-244ENST00000636147 TBC1D30Q9Y2I9 924 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 SMIM28A0A1B0GU29 152 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 CENPXA8MT69 81 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 ZNF99A8MXY4 864 aaPredicted RBP10.97□□□□□ -0.65
CLN3-244ENST00000636147 TRIM24O15164 1050 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 TSPAN1O60635 241 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 HLCSP50747 726 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 EPS8Q12929 822 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 PWP1Q13610 501 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 TARBP2Q15633 366 aaKnown RBP10.97□□□□□ -0.65
CLN3-244ENST00000636147 DEPDC1Q5TB30 811 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 PLPPR4Q7Z2D5 763 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 DCP1BQ8IZD4 617 aaKnown RBP10.97□□□□□ -0.65
CLN3-244ENST00000636147 TAGAPQ8N103 731 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 LSMEM2Q8N112 164 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 FEM1CQ96JP0 617 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 ZNF347Q96SE7 839 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 RBM38Q9H0Z9 239 aaKnown RBP10.97□□□□□ -0.65
CLN3-244ENST00000636147 TPK1Q9H3S4 243 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 BPIFA1Q9NP55 256 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 CATSPERZQ9NTU4 200 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 INTS7Q9NVH2 962 aaKnown RBP10.97□□□□□ -0.65
CLN3-244ENST00000636147 KCTD3Q9Y597 815 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 ENPP3O14638 875 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 CD3EAPO15446 510 aaKnown RBP10.97□□□□□ -0.65
CLN3-244ENST00000636147 KPNA6O60684 536 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 LRATO95237 230 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 C8BP07358 591 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 PFKMP08237 780 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 IQCF3P0C7M6 154 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 GRM5P41594 1212 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 MAGEA3P43357 314 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 CLCN2P51788 898 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 ATP6V0D1P61421 351 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 TOP3AQ13472 1001 aaPredicted RBP10.97□□□□□ -0.65
CLN3-244ENST00000636147 AP5B1Q2VPB7 878 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 NHSL2Q5HYW2 709 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 DET1Q7L5Y6 550 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 PROSER1Q86XN7 944 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 APOBEC3FQ8IUX4 373 aaKnown RBP10.97□□□□□ -0.65
CLN3-244ENST00000636147 HS3ST5Q8IZT8 346 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 NPWQ8N729 165 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 LRRC52Q8N7C0 313 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 SMG8Q8ND04 991 aaKnown RBP10.97□□□□□ -0.65
CLN3-244ENST00000636147 ACDQ96AP0 544 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 PPP1R2P1Q96PQ5 205 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 GAD1Q99259 594 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 OLA1Q9NTK5 396 aaKnown RBP10.97□□□□□ -0.65
CLN3-244ENST00000636147 SLC38A7Q9NVC3 462 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 GALPQ9UBC7 116 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 EVLQ9UI08 416 aaPredicted RBP10.97□□□□□ -0.65
CLN3-244ENST00000636147 PCDHB3Q9Y5E6 796 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 DOT1LQ8TEK3 1739 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 ARAP2Q8WZ64 1704 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 NUP205Q92621 2012 aa10.97□□□□□ -0.65
CLN3-244ENST00000636147 MYBPHLA2RUH7 354 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 NPEPPSL1A6NEC2 478 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 A8MV72 311 aaPredicted RBP10.96□□□□□ -0.65
CLN3-244ENST00000636147 H0YJX3 145 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 VPS4BO75351 444 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 PAGE1O75459 146 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 INMTO95050 263 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 NTRK1P04629 796 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 ICAM3P32942 547 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 RFC2P35250 354 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 SOX6P35712 828 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 INCA1Q0VD86 236 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 KCNAB2Q13303 367 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 ARHGEF7Q14155 803 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 HMBOX1Q6NT76 420 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 C11orf74Q86VG3 221 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 ANKRD46Q86W74 232 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 HIPK1Q86Z02 1210 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 UBE2J2Q8N2K1 259 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 VPS28Q9UK41 221 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 CNTNAP1P78357 1384 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 DIRAS1O95057 198 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 RASAL1O95294 804 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 UMPSP11172 480 aa10.96□□□□□ -0.65
CLN3-244ENST00000636147 TCEA1P23193 301 aaKnown RBP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms