RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 AK4P27144 223 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-215ENST00000601150 RPL22P35268 128 aaKnown RBP16.68■□□□□ 0.26
TRIM28-215ENST00000601150 KCNJ1P48048 391 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 SEMA5AQ13591 1074 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 ITGA9Q13797 1035 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 PTPRCAPQ14761 206 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 CHRNA6Q15825 494 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 ZNF648Q5T619 568 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-215ENST00000601150 SLC30A9Q6PML9 568 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 ADGRG6Q86SQ4 1221 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 GLIS1Q8NBF1 620 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 GPR156Q8NFN8 814 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 OR4K2Q8NGD2 314 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 C19orf43Q9BQ61 176 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 OR2AG1Q9H205 316 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 ARFGAP3Q9NP61 516 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 TAAR2Q9P1P5 351 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 TMPRSS11EQ9UL52 423 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 PLEKHM1Q9Y4G2 1056 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 KCTD3Q9Y597 815 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 ASXL3Q9C0F0 2248 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 RP1P56715 2156 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 GRID2O43424 1007 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 OPA1O60313 960 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 NOBOXO60393 691 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 SUN1O94901 812 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 GAS8O95995 478 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 ZNF8P17098 575 aaPredicted RBP16.67■□□□□ 0.26
TRIM28-215ENST00000601150 TPH1P17752 444 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 ACTR1BP42025 376 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 ZNF140P52738 457 aaPredicted RBP16.67■□□□□ 0.26
TRIM28-215ENST00000601150 ACTR1AP61163 376 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 INSM1Q01101 510 aaPredicted RBP16.67■□□□□ 0.26
TRIM28-215ENST00000601150 C14orf28Q4W4Y0 310 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 HES3Q5TGS1 186 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 CCNI2Q6ZMN8 369 aaPredicted RBP16.67■□□□□ 0.26
TRIM28-215ENST00000601150 OR6C4Q8NGE1 309 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 GDAP1Q8TB36 358 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 MAPK15Q8TD08 544 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 COG1Q8WTW3 980 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 ZDHHC1Q8WTX9 485 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 ABCG4Q9H172 646 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 SPATS2LQ9NUQ6 558 aaKnown RBP16.67■□□□□ 0.26
TRIM28-215ENST00000601150 FKBPLQ9UIM3 349 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 APPL1Q9UKG1 709 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 PRKAB1Q9Y478 270 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 PCYT1BQ9Y5K3 369 aaPredicted RBP16.67■□□□□ 0.26
TRIM28-215ENST00000601150 ST14Q9Y5Y6 855 aa16.67■□□□□ 0.26
TRIM28-215ENST00000601150 FAM149AA5PLN7 773 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 GAPDHSO14556 408 aaPredicted RBP16.66■□□□□ 0.26
TRIM28-215ENST00000601150 LDB2O43679 373 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 UGT1A9O60656 530 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 MTX2O75431 263 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 PRAMEF1O95521 474 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 APRTP07741 180 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 JUPP14923 745 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 UGT1A6P19224 532 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 UGT1A1P22309 533 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 UGT1A4P22310 534 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 UGT1A3P35503 534 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 UGT1A5P35504 534 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 HADHAP40939 763 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 GNG11P61952 73 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 CDH17Q12864 832 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 POU6F1Q14863 301 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 PERM1Q5SV97 790 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 LDLRAP1Q5SW96 308 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 PPP1R21Q6ZMI0 780 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 CHST15Q7LFX5 561 aaPredicted RBP16.66■□□□□ 0.26
TRIM28-215ENST00000601150 DNAAF3Q8N9W5 541 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 OR52K1Q8NGK4 314 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 ZNF398Q8TD17 642 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 ACTRT1Q8TDG2 376 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 AP1M1Q9BXS5 423 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 CEP295Q9C0D2 2601 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 UGT1A7Q9HAW7 530 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 UGT1A10Q9HAW8 530 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 UGT1A8Q9HAW9 530 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 SMOXQ9NWM0 555 aa16.66■□□□□ 0.26
TRIM28-215ENST00000601150 PIH1D1Q9NWS0 290 aaKnown RBP16.66■□□□□ 0.26
TRIM28-215ENST00000601150 COL27A1Q8IZC6 1860 aaPredicted RBP16.65■□□□□ 0.26
TRIM28-215ENST00000601150 CHUKO15111 745 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 SRP72O76094 671 aaKnown RBP16.65■□□□□ 0.26
TRIM28-215ENST00000601150 CDK14O94921 469 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 ACP5P13686 325 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 GLB1P16278 677 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 TCP1P17987 556 aaKnown RBP16.65■□□□□ 0.26
TRIM28-215ENST00000601150 CLDN6P56747 220 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 GTF2H3Q13889 308 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 SEPT6Q14141 434 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 HLTFQ14527 1009 aaKnown RBP eCLIP16.65■□□□□ 0.26
TRIM28-215ENST00000601150 CYP1B1Q16678 543 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 KHDC1Q4VXA5 237 aaKnown RBP16.65■□□□□ 0.26
TRIM28-215ENST00000601150 LRRTM4Q86VH4 590 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 SFTPA2Q8IWL1 248 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 CACTIN-AS1Q8N1I8 211 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 DDHD1Q8NEL9 900 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 OR13C4Q8NGS5 318 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 MAGOHBQ96A72 148 aaKnown RBP16.65■□□□□ 0.26
TRIM28-215ENST00000601150 CCDC74AQ96AQ1 378 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms