RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 PRPF31Q8WWY3 499 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 MRPS31Q92665 395 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 TTC17Q96AE7 1141 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 NMD3Q96D46 503 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 PWWP2AQ96N64 755 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 FAM111AQ96PZ2 611 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 NACC1Q96RE7 527 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 KCNK16Q96T55 309 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 TTC1Q99614 292 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 HSD17B14Q9BPX1 270 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 DDX50Q9BQ39 737 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 WDR83Q9BRX9 315 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 ZNF577Q9BSK1 485 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 THTPAQ9BU02 230 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 SEMA6CQ9H3T2 930 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 PALMDQ9NP74 551 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.17□□□□□ -1.748e-8■■■■■ 44.9
LIG3-211ENST00000588713 DNAJC28Q9NX36 388 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 SLC17A7Q9P2U7 560 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 PPARGC1AQ9UBK2 798 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 TJP2Q9UDY2 1190 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 TUBGCP4Q9UGJ1 667 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 IP6K2Q9UHH9 426 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 CNOT11Q9UKZ1 510 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 MKL2Q9ULH7 1088 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 MAFFQ9ULX9 164 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 PRPF19Q9UMS4 504 aaKnown RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 MAGED2Q9UNF1 606 aaPredicted RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 PSMD13Q9UNM6 376 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 CHMP2BQ9UQN3 213 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 SLC5A6Q9Y289 635 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.17□□□□□ -1.74
LIG3-211ENST00000588713 ENTPD2Q9Y5L3 495 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 MAD1L1Q9Y6D9 718 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 IKBKGQ9Y6K9 419 aa4.17□□□□□ -1.74
LIG3-211ENST00000588713 RTTNQ86VV8 2226 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 A0A0B4J269 797 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 FAM237BA0A1B0GVD1 139 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 SH3PXD2BA1X283 911 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 DYTNA2CJ06 578 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 HEATR9A2RTY3 570 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 MTMR11A4FU01 709 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 SDR42E2A6NKP2 422 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 E5RJQ4 531 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 FAM86B1E9PN63 330 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 MATN2O00339 956 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TRIM38O00635 465 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TXNDC9O14530 226 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 SLC22A2O15244 555 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 YKT6O15498 198 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 FFAR2O15552 330 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TSPAN3O60637 253 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TRMUO75648 421 aaKnown RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 PSMD10O75832 226 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 PDE5AO76074 875 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 LYPLA2O95372 231 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 LSM8O95777 96 aaKnown RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 BAG2O95816 211 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TFAP2AP05549 437 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 CALB1P05937 261 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 ADRB2P07550 413 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 FAM86B2P0C5J1 330 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 FAM58BPP0C7Q3 252 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 ACADMP11310 421 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 ATF6P18850 670 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 CDH2P19022 906 aaPredicted RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 CD58P19256 250 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 CNTFP26441 200 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 OXTRP30559 389 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 GRIK1P39086 918 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 ALDH3B2P48448 385 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 GCLMP48507 274 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 SERPINB9P50453 376 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 CDK9P50750 372 aaKnown RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 ART1P52961 327 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 MTTPP55157 894 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 HDAC4P56524 1084 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 NUP107P57740 925 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TAS2R40P59535 323 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TUBA4AP68366 448 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 NOMO3P69849 1222 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 DLG4P78352 724 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TMPRSS15P98073 1019 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 GTF2BQ00403 316 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 GSTM4Q03013 218 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 LAMTOR4Q0VGL1 99 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 BST1Q10588 318 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 DLG1Q12959 904 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 ORC1Q13415 861 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 NAB1Q13506 487 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TUBB3Q13509 450 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 DPYSQ14117 519 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TFDP1Q14186 410 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 MRPL58Q14197 206 aaKnown RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 DHCR24Q15392 516 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TARBP2Q15633 366 aaKnown RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 TAZQ16635 292 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 GRAMD1BQ3KR37 738 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 C14orf28Q4W4Y0 310 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms