RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 PPP1R21Q6ZMI0 780 aa19.3■□□□□ 0.68
SS18-209ENST00000578595 CCNI2Q6ZMN8 369 aaPredicted RBP19.3■□□□□ 0.68
SS18-209ENST00000578595 PRUNE1Q86TP1 453 aa19.3■□□□□ 0.68
SS18-209ENST00000578595 SFTPA2Q8IWL1 248 aa19.3■□□□□ 0.68
SS18-209ENST00000578595 REXO1L1PQ8IX06 675 aa19.3■□□□□ 0.68
SS18-209ENST00000578595 OR4K2Q8NGD2 314 aa19.3■□□□□ 0.68
SS18-209ENST00000578595 OSGEPL1Q9H4B0 414 aa19.3■□□□□ 0.68
SS18-209ENST00000578595 SPATS2LQ9NUQ6 558 aaKnown RBP19.3■□□□□ 0.68
SS18-209ENST00000578595 ATXN10Q9UBB4 475 aa19.3■□□□□ 0.68
SS18-209ENST00000578595 ACACAQ13085 2346 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 GRID2O43424 1007 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 GAS8O95995 478 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 MT-CO3P00414 261 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 FDFT1P37268 417 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 MAZP56270 477 aaKnown RBP19.29■□□□□ 0.68
SS18-209ENST00000578595 PDE1BQ01064 536 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 ITGA9Q13797 1035 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 LRP8Q14114 963 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 GSE1Q14687 1217 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 CHRNA6Q15825 494 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 CCNG2Q16589 344 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 INSCQ1MX18 579 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 C14orf28Q4W4Y0 310 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 NRROSQ86YC3 692 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 Q8N9G6 341 aaPredicted RBP19.29■□□□□ 0.68
SS18-209ENST00000578595 DNAAF3Q8N9W5 541 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 GATA6Q92908 595 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 PDLIM2Q96JY6 352 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 ZMYND15Q9H091 742 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 RMI1Q9H9A7 625 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 IL26Q9NPH9 171 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 RAB6BQ9NRW1 208 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 PAK5Q9P286 719 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 FEZ2Q9UHY8 353 aaPredicted RBP19.29■□□□□ 0.68
SS18-209ENST00000578595 FKBPLQ9UIM3 349 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 KCNK6Q9Y257 313 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 KCTD3Q9Y597 815 aa19.29■□□□□ 0.68
SS18-209ENST00000578595 GPR39O43194 453 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 UGT1A9O60656 530 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 SNX2O60749 519 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 DNAJC6O75061 913 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 PPFIA2O75334 1257 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 PRAMEF1O95521 474 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 AP2A1O95782 977 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 ZNF8P17098 575 aaPredicted RBP19.28■□□□□ 0.68
SS18-209ENST00000578595 TPH1P17752 444 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 UGT1A6P19224 532 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 UGT1A1P22309 533 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 UGT1A4P22310 534 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 AKT1P31749 480 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 UGT1A3P35503 534 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 UGT1A5P35504 534 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 SPIDRQ14159 915 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 POU6F1Q14863 301 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 SIX1Q15475 284 aaPredicted RBP19.28■□□□□ 0.68
SS18-209ENST00000578595 LINC00523Q86TU6 105 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 TRAPPC5Q8IUR0 188 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 GPR156Q8NFN8 814 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 OR6C4Q8NGE1 309 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 OR13C4Q8NGS5 318 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 BRSK1Q8TDC3 778 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 PATE1Q8WXA2 126 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 ZCCHC14Q8WYQ9 949 aaKnown RBP19.28■□□□□ 0.68
SS18-209ENST00000578595 RTP4Q96DX8 246 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 PBKQ96KB5 322 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 DEPDC7Q96QD5 511 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 ZCCHC2Q9C0B9 1178 aaKnown RBP19.28■□□□□ 0.68
SS18-209ENST00000578595 UGT1A7Q9HAW7 530 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 UGT1A10Q9HAW8 530 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 UGT1A8Q9HAW9 530 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 ETNK1Q9HBU6 452 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 TRIM39Q9HCM9 518 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 ZKSCAN5Q9Y2L8 839 aa19.28■□□□□ 0.68
SS18-209ENST00000578595 EPG5Q9HCE0 2579 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 CCDC78A2IDD5 438 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 RHPN2P1A8MT19 583 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 NUAK1O60285 661 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 NOBOXO60393 691 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 CDK14O94921 469 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 KCNJ1P48048 391 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 BASP1P80723 227 aaKnown RBP19.27■□□□□ 0.68
SS18-209ENST00000578595 KCTD11Q693B1 232 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 ADGRG6Q86SQ4 1221 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 LRRTM4Q86VH4 590 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 SCARF2Q96GP6 870 aaPredicted RBP19.27■□□□□ 0.68
SS18-209ENST00000578595 MS4A14Q96JA4 679 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 VPS35Q96QK1 796 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 ASB8Q9H765 288 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 LRIT1Q9P2V4 623 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 CRLS1Q9UJA2 301 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 DNAJC16Q9Y2G8 782 aa19.27■□□□□ 0.68
SS18-209ENST00000578595 PCYT1BQ9Y5K3 369 aaPredicted RBP19.27■□□□□ 0.68
SS18-209ENST00000578595 COL27A1Q8IZC6 1860 aaPredicted RBP19.26■□□□□ 0.67
SS18-209ENST00000578595 SPEGQ15772 3267 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 TRBV23OR9-2A0A075B6M9 112 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 FAM221BA6H8Z2 402 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 CSO75390 466 aaKnown RBP19.26■□□□□ 0.67
SS18-209ENST00000578595 ECEL1O95672 775 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 RPLP0P05388 317 aaKnown RBP19.26■□□□□ 0.67
SS18-209ENST00000578595 APRTP07741 180 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms