RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 UGT2B4P06133 528 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CBSLP0DN79 551 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 ARSAP15289 507 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 SAT1P21673 171 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 ITGB7P26010 798 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 GDI1P31150 447 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 GJA4P35212 333 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CBSP35520 551 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CTSOP43234 321 aaPredicted RBP7.92□□□□□ -1.14
VPS39-213ENST00000570062 SPINT3P49223 89 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 STK19P49842 368 aaPredicted RBP7.92□□□□□ -1.14
VPS39-213ENST00000570062 IL2P60568 153 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 XIAPP98170 497 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 PFKPQ01813 784 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 GALNT1Q10472 559 aaPredicted RBP7.92□□□□□ -1.14
VPS39-213ENST00000570062 NFATC2Q13469 925 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CHI3L2Q15782 390 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CDKN3Q16667 212 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.92□□□□□ -1.14
VPS39-213ENST00000570062 ZNF284Q2VY69 593 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 HSF5Q4G112 596 aaPredicted RBP7.92□□□□□ -1.14
VPS39-213ENST00000570062 METTL2BQ6P1Q9 378 aaKnown RBP7.92□□□□□ -1.14
VPS39-213ENST00000570062 TTC23LQ6PF05 361 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CNSTQ6PJW8 725 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 TXNDC11Q6PKC3 985 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CRTC1Q6UUV9 634 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 SERPINA13PQ6UXR4 307 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CDHR3Q6ZTQ4 885 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CCDC121Q6ZUS5 278 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 Q6ZVU0 165 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 ZNF765Q7L2R6 523 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 LYSMD3Q7Z3D4 306 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CYP2U1Q7Z449 544 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CCDC116Q8IYX3 515 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 LPGAT1Q92604 370 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 INPP5DQ92835 1189 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 DNASE1L2Q92874 299 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 ATXN7L3BQ96GX2 97 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 FAR2Q96K12 515 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CNDP1Q96KN2 507 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 KLHL32Q96NJ5 620 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 LRRC3BQ96PB8 259 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 GAS2L1Q99501 681 aaPredicted RBP7.92□□□□□ -1.14
VPS39-213ENST00000570062 COPS8Q99627 209 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 ZSCAN5AQ9BUG6 496 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 HDAC8Q9BY41 377 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 DERL2Q9GZP9 239 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 TMEM245Q9H330 911 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 FAM83DQ9H4H8 585 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 MLXIPLQ9NP71 852 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 LATS2Q9NRM7 1088 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 POLR3BQ9NW08 1133 aaPredicted RBP7.92□□□□□ -1.14
VPS39-213ENST00000570062 SMOXQ9NWM0 555 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 OXSMQ9NWU1 459 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CLDND1Q9NY35 253 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 ZDHHC3Q9NYG2 299 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 KCNK4Q9NYG8 393 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 IL1RAPL1Q9NZN1 696 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 TMEM216Q9P0N5 145 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 THAP10Q9P2Z0 257 aaPredicted RBP7.92□□□□□ -1.14
VPS39-213ENST00000570062 VTI1BQ9UEU0 232 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 FKBPLQ9UIM3 349 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CD207Q9UJ71 328 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CRLS1Q9UJA2 301 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 TRMT6Q9UJA5 497 aaKnown RBP7.92□□□□□ -1.14
VPS39-213ENST00000570062 SCML1Q9UN30 329 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 FAM50BQ9Y247 325 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 STK38LQ9Y2H1 464 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 MTCH2Q9Y6C9 303 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 GOLGA8QA0A0J9YX86 632 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 UBA6A0AVT1 1052 aaPredicted RBP7.91□□□□□ -1.14
VPS39-213ENST00000570062 WDR91A4D1P6 747 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 GOLGA8OA6NCC3 632 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 KLHL33A6NCF5 533 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 FOXO6A8MYZ6 492 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 GOLGA8NF8WBI6 632 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 RFXAPO00287 272 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 AURKAO14965 403 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 BNIP3LO60238 219 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 CCDC22O60826 627 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 SNNO75324 88 aaPredicted RBP7.91□□□□□ -1.14
VPS39-213ENST00000570062 LEFTY1O75610 366 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 GJB3O75712 270 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 CLDN7O95471 211 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 OR56A5P0C7T3 313 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 PIRTP0C851 137 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 CCDC166P0CW27 439 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 ENO3P13929 434 aaPredicted RBP7.91□□□□□ -1.14
VPS39-213ENST00000570062 BPIP17213 487 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 CTPS1P17812 591 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 CHRM3P20309 590 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 DRD1P21728 446 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 BGNP21810 368 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 DGKAP23743 735 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 ACRV1P26436 265 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 SLC1A6P48664 564 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 RASSF2P50749 326 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 ARFIP2P53365 341 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 ABCE1P61221 599 aaKnown RBP7.91□□□□□ -1.14
VPS39-213ENST00000570062 IRX1P78414 480 aaPredicted RBP7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms