RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TSTD2Q5T7W7 516 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 IZUMO3Q5VZ72 239 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 BAHD1Q8TBE0 780 aaPredicted RBP19.37■□□□□ 0.69
CLN3-225ENST00000566824 TBATAQ96M53 351 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 RANBP9Q96S59 729 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 RTKNQ9BST9 563 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 SLC13A1Q9BZW2 595 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 TRIM31Q9BZY9 425 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 OR2AG1Q9H205 316 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 CARS2Q9HA77 564 aaKnown RBP19.37■□□□□ 0.69
CLN3-225ENST00000566824 H3BM21 787 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 TP73O15350 636 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 FLRT2O43155 660 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 RAD51CO43502 376 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 DNAJC6O75061 913 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 PPFIA2O75334 1257 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 SRP72O76094 671 aaKnown RBP19.36■□□□□ 0.69
CLN3-225ENST00000566824 IVLP07476 585 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 ZNF8P17098 575 aaPredicted RBP19.36■□□□□ 0.69
CLN3-225ENST00000566824 ADRA1DP25100 572 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 DEFB133Q30KQ1 61 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 PDPK2PQ6A1A2 396 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 CES3Q6UWW8 571 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 NRROSQ86YC3 692 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 SFTPA2Q8IWL1 248 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 PPIL6Q8IXY8 311 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 MCUQ8NE86 351 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 ZNF398Q8TD17 642 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 DTX3LQ8TDB6 740 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 RHBDD1Q8TEB9 315 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 STYXQ8WUJ0 223 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 CDKN2AIPNLQ96HQ2 116 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 PWWP2AQ96N64 755 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 SERPINB12Q96P63 405 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 VPS35Q96QK1 796 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 MRFAP1Q9Y605 127 aa19.36■□□□□ 0.69
CLN3-225ENST00000566824 COL5A1P20908 1838 aaPredicted RBP19.35■□□□□ 0.69
CLN3-225ENST00000566824 HEATR9A2RTY3 570 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 CCDC162PA2VCL2 907 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 YY2O15391 372 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 SIGLEC6O43699 453 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 NMBRP28336 390 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 MC4RP32245 332 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 GRK6P43250 576 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 ID4P47928 161 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 NPY2RP49146 381 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 PDE1BQ01064 536 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 DHX34Q14147 1143 aaKnown RBP19.35■□□□□ 0.69
CLN3-225ENST00000566824 SUZ12Q15022 739 aaKnown RBP19.35■□□□□ 0.69
CLN3-225ENST00000566824 PYCR3Q53H96 274 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 GPRC6AQ5T6X5 926 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 ZDHHC20Q5W0Z9 365 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 SYDE1Q6ZW31 735 aaPredicted RBP19.35■□□□□ 0.69
CLN3-225ENST00000566824 PIANPQ8IYJ0 282 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 RUNDC3BQ96NL0 473 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 ASB8Q9H765 288 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 TRIM39Q9HCM9 518 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 SPASTQ9UBP0 616 aa19.35■□□□□ 0.69
CLN3-225ENST00000566824 SPAARA0A1B0GVQ0 90 aa19.34■□□□□ 0.69
CLN3-225ENST00000566824 KIF2AO00139 706 aaPredicted RBP19.34■□□□□ 0.69
CLN3-225ENST00000566824 BANF1O75531 89 aa19.34■□□□□ 0.69
CLN3-225ENST00000566824 CTSEP14091 401 aa19.34■□□□□ 0.69
CLN3-225ENST00000566824 CSRP1P21291 193 aaKnown RBP19.34■□□□□ 0.69
CLN3-225ENST00000566824 AK4P27144 223 aaPredicted RBP19.34■□□□□ 0.69
CLN3-225ENST00000566824 MAGEA3P43357 314 aa19.34■□□□□ 0.69
CLN3-225ENST00000566824 RPL21P46778 160 aaKnown RBP19.34■□□□□ 0.69
CLN3-225ENST00000566824 ACVR1Q04771 509 aa19.34■□□□□ 0.69
CLN3-225ENST00000566824 NFATC2Q13469 925 aa19.34■□□□□ 0.69
CLN3-225ENST00000566824 PCID2Q5JVF3 399 aa19.34■□□□□ 0.69
CLN3-225ENST00000566824 PHYKPLQ8IUZ5 450 aa19.34■□□□□ 0.69
CLN3-225ENST00000566824 PPHLN1Q8NEY8 458 aaKnown RBP19.34■□□□□ 0.69
CLN3-225ENST00000566824 HDAC10Q969S8 669 aa19.34■□□□□ 0.69
CLN3-225ENST00000566824 BFARQ9NZS9 450 aa19.34■□□□□ 0.69
CLN3-225ENST00000566824 VPS18Q9P253 973 aa19.34■□□□□ 0.69
CLN3-225ENST00000566824 SNX24Q9Y343 169 aa19.34■□□□□ 0.69
CLN3-225ENST00000566824 GPSM3Q9Y4H4 160 aa19.34■□□□□ 0.69
CLN3-225ENST00000566824 LY6G6EA0A0G2JKS1 128 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 AGAP14A8MT82 685 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 H7C0S8 307 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 NUAK1O60285 661 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 KCNK5O95279 499 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 TUBB4AP04350 444 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 HADHAP40939 763 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 BLKP51451 505 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 B4GALNT1Q00973 533 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 CTBSQ01459 385 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 SMAD1Q15797 465 aaKnown RBP19.33■□□□□ 0.69
CLN3-225ENST00000566824 WHAMMP3Q1A5X7 153 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 SKIDA1Q1XH10 827 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 MSS51Q4VC12 460 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 FNBP1LQ5T0N5 605 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 PSAPL1Q6NUJ1 521 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 ZNF547Q8IVP9 402 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 RASGEF1AQ8N9B8 481 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 DDHD1Q8NEL9 900 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 OR4C6Q8NH72 309 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 KIF18AQ8NI77 898 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 GDAP1Q8TB36 358 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 C19orf43Q9BQ61 176 aa19.33■□□□□ 0.69
CLN3-225ENST00000566824 IL22Q9GZX6 179 aa19.33■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms