RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ZC3H18Q86VM9 953 aaKnown RBP14.72□□□□□ -0.05
CLN3-213ENST00000565047 TTC30BQ8N4P2 665 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 TRAM1L1Q8N609 369 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 SLC37A2Q8TED4 501 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 KCNE4Q8WWG9 221 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 TMEM159Q96B96 161 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 RBM41Q96IZ5 413 aaKnown RBP14.72□□□□□ -0.05
CLN3-213ENST00000565047 FCRL3Q96P31 734 aaPredicted RBP14.72□□□□□ -0.05
CLN3-213ENST00000565047 VAT1Q99536 393 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 ZSCAN5AQ9BUG6 496 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 HEMGNQ9BXL5 484 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 STRADBQ9C0K7 418 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 CARD9Q9H257 536 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 TRIM39Q9HCM9 518 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 PDP2Q9P2J9 529 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 FAM153AQ9UHL3 310 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 LOXL2Q9Y4K0 774 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 IGHV5-10-1A0A0J9YXX1 117 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 RHPN2P1A8MT19 583 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 HACD1B0YJ81 288 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 APOC4-APOC2K7ER74 178 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 KLK10O43240 276 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 ASMTLO95671 621 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 APOC2P02655 101 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 ITIH1P19827 911 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 ALDH4A1P30038 563 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 SLC5A2P31639 672 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 CSF2RBP32927 897 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 CA5AP35218 305 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 PTPN7P35236 360 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 HMGCLP35914 325 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 CHRNA4P43681 627 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 ARSDP51689 593 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 COPS2P61201 443 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 XRCC4Q13426 336 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 KHDC1Q4VXA5 237 aaKnown RBP14.71□□□□□ -0.05
CLN3-213ENST00000565047 ODF2Q5BJF6 829 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 SIRPB2Q5JXA9 342 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 NKAIN2Q5VXU1 208 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 FOXR1Q6PIV2 292 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 USP53Q70EK8 1073 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 GPR155Q7Z3F1 870 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 PIM3Q86V86 326 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 ZNF547Q8IVP9 402 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 DTX3LQ8TDB6 740 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 HTR3CQ8WXA8 447 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 ALG3Q92685 438 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 GLYATL1Q969I3 302 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 HAUS1Q96CS2 278 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 CALR3Q96L12 384 aaKnown RBP14.71□□□□□ -0.05
CLN3-213ENST00000565047 UBL7Q96S82 380 aaPredicted RBP14.71□□□□□ -0.05
CLN3-213ENST00000565047 SRPK1Q96SB4 655 aaKnown RBP14.71□□□□□ -0.05
CLN3-213ENST00000565047 C10orf88Q9H8K7 445 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 CPNE5Q9HCH3 593 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 ARFGAP3Q9NP61 516 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 SLC23A2Q9UGH3 650 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 ZNHIT2Q9UHR6 403 aa14.71□□□□□ -0.05
CLN3-213ENST00000565047 A0A0U1RQJ8 604 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 C9orf172C9J069 976 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 GAPDHSO14556 408 aaPredicted RBP14.7□□□□□ -0.06
CLN3-213ENST00000565047 GRID2O43424 1007 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 CTNNA2P26232 953 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 RBL1P28749 1068 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 LIMK2P53671 638 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 MSLNQ13421 630 aaPredicted RBP14.7□□□□□ -0.06
CLN3-213ENST00000565047 SLC1A5Q15758 541 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 AMZ1Q400G9 498 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 ALS2CLQ60I27 953 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 PID1Q7Z2X4 250 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 C11orf96Q7Z7L8 435 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 ACRBPQ8NEB7 543 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 OR4D9Q8NGE8 314 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 PLEKHG4BQ96PX9 1271 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 VPS35Q96QK1 796 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 SPATA16Q9BXB7 569 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 GPR63Q9BZJ6 419 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 B3GNT4Q9C0J1 378 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 IL26Q9NPH9 171 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 RAD18Q9NS91 495 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 IL17CQ9P0M4 197 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 TMEM9Q9P0T7 183 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 TRHDEQ9UKU6 1024 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 KCNK6Q9Y257 313 aa14.7□□□□□ -0.06
CLN3-213ENST00000565047 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.7□□□□□ -0.06
CLN3-213ENST00000565047 ZFC3H1O60293 1989 aaKnown RBP14.7□□□□□ -0.06
CLN3-213ENST00000565047 TRBV23OR9-2A0A075B6M9 112 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 TEX51A0A1B0GUA7 166 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 GRID2IPA4D2P6 1211 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 GPR89AB7ZAQ6 455 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 ATXN7O15265 892 aaPredicted RBP14.69□□□□□ -0.06
CLN3-213ENST00000565047 SLC25A14O95258 325 aaPredicted RBP14.69□□□□□ -0.06
CLN3-213ENST00000565047 GPR89BP0CG08 455 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 PYGMP11217 842 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 CCL4P13236 92 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 ACP5P13686 325 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 ADRA1AP35348 466 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 VAV2P52735 878 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 UCNP55089 124 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 TMPRSS3P57727 454 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 CXADRP78310 365 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms